Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   PUW52_RS03265 Genome accession   NZ_CP118078
Coordinates   636877..640557 (+) Length   1226 a.a.
NCBI ID   WP_070672704.1    Uniprot ID   A0A412PPZ0
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 631877..645557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS03255 (PUW52_03255) - 632274..633488 (+) 1215 WP_024051909.1 ABC transporter permease -
  PUW52_RS03260 (PUW52_03260) rexB 633608..636880 (+) 3273 WP_024051908.1 ATP-dependent nuclease subunit B Machinery gene
  PUW52_RS03265 (PUW52_03265) rexA 636877..640557 (+) 3681 WP_070672704.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PUW52_RS03270 (PUW52_03270) glgB 641077..642987 (+) 1911 WP_274984574.1 1,4-alpha-glucan branching protein GlgB -
  PUW52_RS03275 (PUW52_03275) - 642991..644133 (+) 1143 WP_024051905.1 glucose-1-phosphate adenylyltransferase -
  PUW52_RS03280 (PUW52_03280) glgD 644123..645262 (+) 1140 WP_024051904.1 glucose-1-phosphate adenylyltransferase subunit GlgD -

Sequence


Protein


Download         Length: 1226 a.a.        Molecular weight: 141289.96 Da        Isoelectric Point: 5.1517

>NTDB_id=720992 PUW52_RS03265 WP_070672704.1 636877..640557(+) (rexA) [Streptococcus anginosus strain VSI16]
MRQIPFLSQEEIYALQDQEAQSDKAQKRTPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFT
VKAASELKERLEKELSKVLKATDDEELKQHLAQQLADIPNADIGTMDSFTQKVLNKYGYLLELAPNFRILQNASEQLLLQ
NEVFEQVFEEFYQSDQAILFKKLVKNFTGQRKDLLGFREQIYKIYAFLQSTSSPIEYLEQDFLKAYAHADFQEEKAQLLA
QTKEALFDLEEFFQYHLANEAKEFPKAKYLENVQRVLDCLASLQGHSSEEAYLTTLNNIVEISRASNGKALTNSGRKEEL
KEIINAYNEKRKEKIQVLRDLADQFYRFEFQVTYHEEAKEILLVLQQFMKSFVTSYLQRKKEENAFEFADISHFAIQILE
EFPDVRHFYRTKYHEVMVDEYQDTNHTQERMLELLSNGGNRFMVGDIKQSIYRFRQADPQIFNEKFKTYQDDSQQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKKAPNPQYQTEFLIYDGTLETDNEENDKDVSSVSAG
EVALVIKEIIRLHNEENVPFEDMTLLTASRTRNDVILSEFAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPFNDYA
LVALLKSPMFTFTEDELARLALQKKVTEATYVTHQENLYEKLKNSLSGNGQHPELITPPLLKKIQQFQEILLDWREFAKI
NSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETHNDLASVVVAAPKHAV
RLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALIISRQNGVGIKYVADVVVDVADELAPNHVRLSIDTLPYEQNEREIH
LASISEQMRLLYVAMTRAERKLYLVGKGRQESLEKKTFPAPENGRLAASIRQTMTSFQDWIWALQTVFEKDDLAFSTQFV
TDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEPVMDTDGVEI
MEKKTPDFIGKTSFELPDFAKKAPVIGAQIGSAVHELMQRIPLNQLPTIAILKKILAQVQAEETVKKKIDLQKIASFFET
ELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLADRIVLFDYKTDQYTNPSELVERYQAQLALYAEALR
RSYGIEKIEKYLVLLGGVQLQVVKVD

Nucleotide


Download         Length: 3681 bp        

>NTDB_id=720992 PUW52_RS03265 WP_070672704.1 636877..640557(+) (rexA) [Streptococcus anginosus strain VSI16]
ATGAGACAGATTCCATTTTTGAGTCAGGAAGAAATCTATGCTTTGCAGGATCAAGAAGCACAGTCTGACAAAGCTCAAAA
ACGTACACCAGAGCAAATCGAAGCCATTTACTCCTCCGGTCAAAATATCCTTGTATCTGCTTCTGCAGGCTCAGGAAAAA
CCTTTGTTATGGTGCAGCGGATTATTGACCAAATTCTGCGGGGAGTTCGCATTGACCAGCTCTTCATTTCGACTTTTACC
GTTAAAGCAGCCAGTGAATTAAAAGAGCGCTTGGAGAAAGAGTTATCCAAGGTCTTGAAGGCAACAGATGATGAGGAGCT
CAAACAGCACTTGGCGCAGCAATTAGCCGATATTCCGAATGCCGACATTGGAACAATGGACTCTTTTACCCAAAAGGTCC
TCAATAAATATGGTTATCTCCTAGAATTGGCGCCAAATTTTCGCATTTTGCAAAATGCGAGTGAGCAGTTATTGCTACAA
AACGAAGTTTTTGAGCAAGTTTTTGAAGAATTCTATCAATCTGATCAGGCTATTTTATTTAAAAAATTAGTCAAAAACTT
TACCGGTCAAAGAAAAGATTTACTTGGTTTTCGAGAGCAGATTTATAAGATTTATGCTTTTTTGCAATCCACCAGTAGCC
CAATCGAATACTTAGAACAAGATTTCTTGAAAGCTTACGCTCATGCGGATTTCCAAGAAGAAAAAGCGCAACTTTTAGCA
CAAACAAAAGAAGCCCTTTTTGACCTAGAAGAATTTTTCCAGTATCATTTGGCGAATGAAGCCAAGGAATTTCCCAAAGC
AAAATACCTTGAAAATGTGCAGCGTGTGCTTGATTGTCTGGCAAGTTTACAAGGGCATTCCTCTGAGGAAGCCTATCTCA
CAACGCTCAATAACATTGTAGAAATATCGCGTGCCAGCAATGGAAAAGCCTTGACGAACAGCGGACGAAAAGAAGAATTA
AAAGAAATTATTAACGCCTATAACGAAAAACGCAAAGAAAAAATTCAAGTTTTACGAGATTTGGCAGATCAATTTTATCG
CTTTGAATTTCAAGTGACCTATCATGAGGAAGCCAAGGAAATCTTGCTTGTATTGCAGCAATTTATGAAATCGTTTGTGA
CAAGCTATCTACAACGGAAAAAAGAAGAAAATGCGTTTGAATTTGCAGATATCAGTCATTTTGCCATTCAGATTTTAGAA
GAATTTCCTGATGTGCGCCACTTTTATCGGACAAAATACCATGAAGTCATGGTGGATGAGTATCAAGATACCAACCACAC
GCAAGAGCGGATGCTAGAACTGTTATCAAATGGGGGTAATCGCTTTATGGTGGGGGATATTAAGCAGTCTATTTATCGTT
TTCGTCAGGCTGATCCGCAGATTTTTAATGAGAAATTTAAAACCTATCAAGACGATAGCCAGCAAGGGAAATTGATTGTT
TTGAAGGAAAATTTCCGCAGTCATGTGGAAGTCTTGGAAGCCACGAATGATGTTTTCAAACGTCTCATGGATGAGGAAGT
GGGAGAAATTGATTATAATGAAACGCATTATCTGGTAGCTGGAAATCCTGCTAAAAAAGCACCAAATCCACAATATCAGA
CGGAATTTCTCATTTATGACGGAACGCTTGAGACGGATAATGAGGAGAATGACAAGGATGTTTCTTCTGTTTCTGCAGGA
GAAGTAGCGCTGGTCATTAAGGAAATTATCCGTCTGCACAATGAGGAAAATGTCCCATTTGAAGATATGACATTGCTAAC
GGCTTCGCGGACGCGCAACGATGTGATTTTATCTGAGTTTGCCAAATACGGTATCCCAGTCGTTTCAGACGGTGGCGAGG
ATAATTATTTGCAATCTGTAGAAGTTATGGTGATGTTGGATACCCTGCGTACGATTAACAATCCGTTCAATGATTATGCT
TTAGTGGCGCTCTTAAAGTCACCAATGTTCACCTTTACTGAGGATGAATTGGCTCGTTTGGCCTTGCAAAAAAAGGTGAC
AGAAGCTACTTATGTTACTCATCAGGAAAATCTCTATGAGAAATTGAAAAATTCTCTGAGTGGGAACGGTCAACATCCCG
AACTCATCACACCTCCTCTTTTAAAGAAAATCCAGCAGTTTCAAGAAATATTGCTGGATTGGCGAGAGTTTGCAAAAATA
AATTCGCTCTATGATTTGCTTTGGAAAATTTATCAAGACCGCTTTTATTATGACTATGTAGGAGCCCTACCAAATGGAGC
AGGGCGTCAAGCGAATCTCTACGCTCTTACTTTGCGAGCAAATGACTACGAAAAGATGAGTTTTAAGGGCTTGTCGCGTT
TTATTGGGATGATTGATAAGATCTTAGAAACTCACAATGATTTGGCGAGTGTCGTCGTTGCGGCTCCGAAGCATGCAGTC
CGCTTGATGACAGTTCATAAGAGCAAAGGTTTGGAATTTAAATATGTCTTTTTGCTTAATATGGATAAAGTCTTCAATCG
TAAGGATAGTAGTTCTGCTTTGATTATCAGTCGTCAAAATGGCGTCGGCATCAAGTATGTTGCGGACGTAGTGGTAGACG
TTGCTGATGAGCTGGCGCCTAATCATGTTCGTTTGTCTATCGATACTCTTCCTTATGAGCAAAATGAGCGTGAGATTCAT
TTGGCAAGTATTTCTGAGCAGATGCGTCTGCTCTATGTTGCTATGACGCGGGCAGAAAGAAAGCTGTATCTGGTTGGCAA
AGGTCGTCAAGAAAGCTTGGAGAAAAAGACCTTCCCTGCTCCTGAAAATGGTCGTTTAGCAGCCTCCATTAGGCAAACTA
TGACAAGTTTTCAAGACTGGATTTGGGCTTTACAGACAGTCTTTGAGAAAGACGATTTAGCTTTTTCAACACAATTTGTG
ACGGATAGTGACTTAACAAGTGAGAAAATAGGTCAGTTAAAGCTGAAGGAACGGATTGTCGAGGAGAACTTAGCGCACAA
TCGCCAGTCTGAGGATATTCGCAGGGCTTTGGATATTTTGGAAAATGTGGACAGGCTAAATACTCAGTATCGAGCAGCCA
TCCATTTGCCAAGTGTTCGGACACCGAGCCAAATCAAGAAATTTTATGAACCGGTCATGGATACAGACGGTGTTGAGATT
ATGGAGAAAAAAACTCCAGATTTTATTGGAAAAACTTCTTTTGAACTACCTGACTTTGCTAAAAAAGCCCCTGTTATAGG
AGCGCAAATCGGTAGTGCTGTCCATGAACTGATGCAGCGTATTCCTTTAAATCAACTGCCTACAATAGCTATTTTAAAGA
AAATATTGGCTCAGGTTCAGGCAGAAGAAACTGTCAAAAAGAAGATTGATTTGCAAAAGATAGCTAGTTTCTTTGAGACA
GAGCTTGGTCAACTACTCTTAAAGCAGGCAGATAAAGTTTATCGTGAAGCTCCATTTGCTATGTTAAAGCAAGATCAAGC
GAGCGGACAGGATTTTGTAGTCCGTGGAATTTTGGATGGTTATCTCCTACTGGCTGATCGTATCGTTCTCTTTGATTATA
AGACAGATCAATATACAAATCCAAGTGAATTAGTGGAGCGCTACCAGGCACAATTAGCACTTTACGCTGAAGCTCTTCGT
CGTTCGTATGGTATTGAAAAAATAGAAAAATATCTAGTGTTGTTGGGCGGAGTTCAACTTCAAGTAGTAAAAGTAGACTA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A412PPZ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

60.604

100

0.606