Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   PUW52_RS03260 Genome accession   NZ_CP118078
Coordinates   633608..636880 (+) Length   1090 a.a.
NCBI ID   WP_024051908.1    Uniprot ID   A0A412PPI0
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 628608..641880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS03230 (PUW52_03230) - 628905..629771 (+) 867 WP_024051912.1 ABC transporter permease -
  PUW52_RS03235 (PUW52_03235) - 629768..630526 (+) 759 WP_024051911.1 ABC transporter ATP-binding protein -
  PUW52_RS03240 (PUW52_03240) - 630542..630883 (-) 342 WP_003028044.1 hypothetical protein -
  PUW52_RS03245 (PUW52_03245) - 630971..631183 (+) 213 WP_003025304.1 YdbC family protein -
  PUW52_RS03250 (PUW52_03250) - 631384..632277 (+) 894 WP_024051910.1 ABC transporter ATP-binding protein -
  PUW52_RS03255 (PUW52_03255) - 632274..633488 (+) 1215 WP_024051909.1 ABC transporter permease -
  PUW52_RS03260 (PUW52_03260) rexB 633608..636880 (+) 3273 WP_024051908.1 ATP-dependent nuclease subunit B Machinery gene
  PUW52_RS03265 (PUW52_03265) rexA 636877..640557 (+) 3681 WP_070672704.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125380.24 Da        Isoelectric Point: 5.2294

>NTDB_id=720991 PUW52_RS03260 WP_024051908.1 633608..636880(+) (rexB) [Streptococcus anginosus strain VSI16]
MKLLYTDIRNPLTKILVKEAERLAQAGKRVFYIAPNSLSFEKERAVLSLLENHASFAITVTRFAQMARYFVLNDVQQGRP
LDDIGLGMLFYKVLSEMEEHDLQVYGGIRTDVQFIQQLVELFHELQAAQMTFADLDYLDEDEKKADLIKILQLVTHQLNQ
SEFISESNIMVFANHITAGDVDKELQGLALVIDGFTRFSAEEAYLIELLHSKGVEIIIGVYASEKAYRATFREGNLYQAS
VDFLRHLANEYEVKPEYRPATQPDDAFGNISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEELEYVAKSIRQRVHD
GARYKDIRLLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLVQFIEALVRLKRYNFRTEDLLNLVKTGLYGHLKQE
ELDLFEQYIRFADVKGISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFLKSRSQTATGLLQKFHQFLTTIAFSQNFA
GLVDSTNPQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAVGLTQDYFPKNSQNKSLLSDEDRLRLNEATDAHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SPYLLELHEQPIGLPIEVKRLQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSSLETETLSTQTLQALYPPHQAFLLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDARSHGNFLHRVFEKVMQEQSS
EPFDNRLEKAIQETSQEAEFKTLYTENAEALFAHEVLLDTARATGRVLERNDLVETIQEEAVFGQEETNVLILSDGRNLQ
IRGKVDRIDRLRIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMNEEEHAFGAMYLQMTNPLVPLAKTK
SQGDAVKEAMKNLEYKGLFLSEQARQLNALYDKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFYINPYTENGRSIA
PFVEQYKSITGFEANFHLSSTRHLVKLDSHPTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=720991 PUW52_RS03260 WP_024051908.1 633608..636880(+) (rexB) [Streptococcus anginosus strain VSI16]
ATGAAATTACTTTATACTGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAAGCAGG
CAAGCGCGTGTTTTATATTGCCCCCAACTCTCTTTCATTTGAAAAAGAGAGGGCTGTTTTGAGTCTTTTAGAAAACCACG
CTTCGTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCGCGTTATTTTGTCCTCAATGATGTGCAGCAAGGCAGACCA
TTAGACGATATTGGTTTGGGAATGCTCTTTTATAAGGTATTATCTGAAATGGAAGAGCATGATTTGCAGGTGTACGGAGG
CATTCGGACGGATGTGCAGTTTATTCAGCAATTGGTTGAGCTTTTTCATGAATTGCAAGCTGCTCAAATGACCTTTGCGG
ATTTAGACTATCTAGATGAGGATGAGAAAAAAGCAGATTTGATCAAGATTTTACAGCTAGTGACGCATCAGCTAAATCAG
AGTGAATTTATTTCTGAGTCAAATATTATGGTCTTTGCTAATCATATTACAGCAGGTGATGTAGATAAAGAATTGCAAGG
ATTGGCTTTGGTCATTGACGGTTTTACACGTTTTTCAGCTGAAGAAGCTTATTTGATCGAGCTTTTGCATAGCAAGGGTG
TGGAAATCATTATTGGTGTTTATGCCAGTGAGAAGGCATACCGTGCAACTTTTCGAGAGGGCAATCTCTATCAGGCTAGC
GTGGATTTCTTGCGCCATTTGGCAAATGAGTATGAAGTGAAACCTGAATATAGACCTGCAACGCAGCCAGATGATGCTTT
TGGGAACATTTCAAAACTGCTAGAAAGCCGTTATGATTTCTCAGATGTTGAGTTGGAATTGACGGAGCAAGACCGCTCGC
ATGTACAGATTTGGTCGACTGTCAATCAAAAAGAAGAACTGGAATATGTGGCGAAAAGCATTCGCCAGCGAGTTCATGAT
GGTGCTCGCTACAAAGATATTCGCTTACTTTTGGGAGATGTGGAAGCCTATCGTTTGCAGTTAAAGACGATTTTTGATCA
GTATCAGATTCCTTTTTATTTGGGGCGAAGCGAGTCCATGGCACATCACCCTTTGGTGCAGTTTATTGAAGCGTTAGTGC
GTTTAAAACGCTATAATTTTCGGACAGAAGATTTGCTTAATCTTGTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTATTTGAGCAATATATTCGCTTTGCAGATGTAAAAGGGATTAGTAAATTTTCTAAAGATTTTACTCATAA
TCAGCATCAAAAATTTGACCTGATTCACATCAATCAATTAAGAAAAAAAATAGTCACTCCGCTTTTGGAGTTTTTAAAAT
CTCGCAGTCAAACAGCGACAGGTTTGCTTCAAAAATTTCATCAATTTTTAACAACAATTGCTTTTTCTCAGAATTTTGCT
GGTTTGGTAGATTCTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
ATTTGCCAGTGTCTTTTCAGCCAGCAAGGTCAAGCTAGATGATTTTCTGACTCTAGTGCAGTCAGGAATGCTGTTATCCA
ACTATCGAACTATTCCAGCAACGGTGGACGTTGTGACCGTTCAATCTTATGATTTGATTGAGCCCTTGTCAAGTCCTTTT
GTCTATGCTGTTGGTTTGACCCAAGACTATTTTCCAAAAAATTCCCAAAATAAGAGCCTTTTGTCAGACGAAGACCGACT
ACGATTAAATGAAGCGACTGATGCGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTTG
CCTTGTCGCTTTTGAATGCTGCAACAGAGAGGCTTGTCCTCTCCACCCCTCAGATTGTCAATGAAATAGAGAACAACATT
TCTCCATATTTGTTAGAATTGCATGAACAACCAATTGGGCTGCCGATTGAAGTGAAGCGTTTGCAGGCAACGAGTGATGA
TATTGGAACTTATCGAGCTCTGCTGGCAAGGGTTATTGAGTTGAATCAAGGGGATATTGATCGGGAGCGTTCTTTGACGG
AGAAAGAGCAGACTTTTTGGTCAGTAGCTGTGCGGGTTCTGCGCAAAAAATTGGAAAGCGAAGGTATTTCGATTCCTAAT
GTAACGTCAAGCCTTGAAACAGAAACCTTGTCAACGCAGACATTGCAAGCTCTTTATCCGCCTCATCAGGCATTTCTACT
GTCGACTTCAGCTTTGACAGAATTCTACCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCACCCAGATGCGCGCAGCCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGAGCAGTCTAGT
GAGCCATTTGATAATCGCCTAGAAAAAGCCATTCAAGAAACCAGTCAGGAGGCAGAATTTAAAACTCTTTATACGGAAAA
TGCAGAAGCCTTGTTTGCTCACGAAGTCTTGCTGGACACAGCGCGTGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACCATTCAAGAAGAAGCTGTTTTCGGTCAAGAAGAAACAAATGTTCTAATCTTGTCAGACGGACGCAACCTTCAA
ATTCGAGGGAAAGTTGACCGGATTGACCGTTTGAGGATAGATGGCAGTCTAGGCGTTGTTGACTATAAATCAAGCGATAC
GAATTTTGATTTTCAGAAATTTTTCAATGGCTTAAATTCTCAATTACCTACCTATCTAGCAGCTTTGAAACAAGAGTCGT
GGATGAATGAAGAAGAGCATGCTTTTGGCGCCATGTATTTGCAGATGACCAATCCACTTGTGCCTTTAGCCAAGACGAAA
TCGCAAGGCGACGCTGTCAAAGAAGCAATGAAGAACCTAGAATATAAAGGTCTGTTCTTGTCTGAGCAGGCTCGTCAGCT
GAATGCTTTGTACGATAAAAAGAAAGTGAATCTGTTGAGTCAAGAGGAGTTGGAGACATTGTTGGCTTATAATGCACTCT
TGTATCGCCGTGCTGCTGAGCAGATCTTGGCAGGGCATTTTTACATCAATCCTTATACGGAAAATGGCAGAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCCATTACGGGATTTGAAGCTAACTTTCACCTCTCTAGCACCCGCCATTTGGTTAAGTT
AGATAGCCACCCGACAGGTGAAAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PPI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.818

100

0.563