Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW953_RS04430 Genome accession   NZ_CP102975
Coordinates   932138..933124 (+) Length   328 a.a.
NCBI ID   WP_258409820.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927138..938124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS04410 (NW953_04410) - 927506..929128 (+) 1623 WP_258409819.1 peptide ABC transporter substrate-binding protein -
  NW953_RS04415 (NW953_04415) trpS 929247..930236 (-) 990 WP_070004251.1 tryptophan--tRNA ligase -
  NW953_RS04420 (NW953_04420) spxA 930531..930926 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW953_RS04425 (NW953_04425) mecA 931298..932017 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW953_RS04430 (NW953_04430) coiA 932138..933124 (+) 987 WP_258409820.1 competence protein CoiA family protein Machinery gene
  NW953_RS04435 (NW953_04435) pepF 933172..934980 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NW953_RS04440 (NW953_04440) yjbH 935440..936246 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW953_RS04445 (NW953_04445) - 936269..936634 (-) 366 WP_258409821.1 truncated hemoglobin YjbI -
  NW953_RS04450 (NW953_04450) - 936738..937331 (-) 594 WP_258409822.1 CYTH domain-containing protein -
  NW953_RS04455 (NW953_04455) - 937517..937864 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38792.37 Da        Isoelectric Point: 9.6529

>NTDB_id=720989 NW953_RS04430 WP_258409820.1 932138..933124(+) (coiA) [Staphylococcus aureus strain 16CS0209]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720989 NW953_RS04430 WP_258409820.1 932138..933124(+) (coiA) [Staphylococcus aureus strain 16CS0209]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCATATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.256

100

0.973
  coiA Staphylococcus aureus N315

97.256

100

0.973