Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NW945_RS05850 Genome accession   NZ_CP102974
Coordinates   1214782..1215654 (+) Length   290 a.a.
NCBI ID   WP_258414633.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1209782..1220654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS05825 (NW945_05825) - 1209927..1210694 (+) 768 WP_258414631.1 ribonuclease HII -
  NW945_RS05830 (NW945_05830) sucC 1210803..1211969 (+) 1167 WP_006190114.1 ADP-forming succinate--CoA ligase subunit beta -
  NW945_RS05835 (NW945_05835) sucD 1211991..1212899 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  NW945_RS05840 (NW945_05840) - 1213186..1213338 (+) 153 Protein_1142 cell wall hydrolase -
  NW945_RS05845 (NW945_05845) fmhC 1213366..1214610 (+) 1245 WP_258414632.1 FemA/FemB family glycyltransferase FmhC -
  NW945_RS05850 (NW945_05850) dprA 1214782..1215654 (+) 873 WP_258414633.1 DNA-processing protein DprA Machinery gene
  NW945_RS05855 (NW945_05855) topA 1215828..1217903 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  NW945_RS05860 (NW945_05860) trmFO 1218059..1219366 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=720948 NW945_RS05850 WP_258414633.1 1214782..1215654(+) (dprA) [Staphylococcus aureus strain 01-RR-86]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKISYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=720948 NW945_RS05850 WP_258414633.1 1214782..1215654(+) (dprA) [Staphylococcus aureus strain 01-RR-86]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAATAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986