Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PUW71_RS07100 Genome accession   NZ_CP118053
Coordinates   1408049..1408645 (-) Length   198 a.a.
NCBI ID   WP_003023742.1    Uniprot ID   A0A412PNE3
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403049..1413645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS07075 (PUW71_07075) - 1403438..1404118 (-) 681 WP_164232040.1 TIGR02206 family membrane protein -
  PUW71_RS07080 (PUW71_07080) - 1404125..1404823 (-) 699 WP_264341279.1 TIGR02206 family membrane protein -
  PUW71_RS07085 (PUW71_07085) - 1404827..1405378 (-) 552 WP_024052821.1 DUF1697 domain-containing protein -
  PUW71_RS07090 (PUW71_07090) murF 1405368..1406738 (-) 1371 WP_024052822.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  PUW71_RS07095 (PUW71_07095) - 1406870..1407916 (-) 1047 WP_024052823.1 D-alanine--D-alanine ligase -
  PUW71_RS07100 (PUW71_07100) recR 1408049..1408645 (-) 597 WP_003023742.1 recombination mediator RecR Machinery gene
  PUW71_RS07105 (PUW71_07105) pbp2b 1408656..1410716 (-) 2061 WP_195916323.1 penicillin-binding protein PBP2B -
  PUW71_RS07110 (PUW71_07110) - 1410873..1411565 (-) 693 WP_003023729.1 phosphoglycerate mutase -
  PUW71_RS07115 (PUW71_07115) perR 1411707..1412168 (-) 462 WP_070811386.1 peroxide-responsive transcriptional repressor PerR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21620.67 Da        Isoelectric Point: 4.3503

>NTDB_id=720803 PUW71_RS07100 WP_003023742.1 1408049..1408645(-) (recR) [Streptococcus anginosus strain VSI40]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=720803 PUW71_RS07100 WP_003023742.1 1408049..1408645(-) (recR) [Streptococcus anginosus strain VSI40]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCGAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATAATCCTTGTGCTATCTGCACCGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTATCTGCTATGGAAAATATTCAAGAATACCATGGTTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACACGGTTGATGGATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCAGATGGGGAAGCGACTTCCATGTATATCTCGAGGGTGTTA
AAGCCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGATATTGAATATGCAGACGAAGTAAC
GCTGCTTCGGGCTATTGAGAATCGTACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PNE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48