Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW965_RS04380 Genome accession   NZ_CP102968
Coordinates   926656..927642 (+) Length   328 a.a.
NCBI ID   WP_103188523.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 921656..932642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS04355 (NW965_04350) opp4B 921872..922834 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  NW965_RS04360 (NW965_04355) opp4C 922846..923727 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NW965_RS04365 (NW965_04360) trpS 923769..924758 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW965_RS04370 (NW965_04365) spxA 925053..925448 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW965_RS04375 (NW965_04370) mecA 925819..926535 (+) 717 WP_031906209.1 adaptor protein MecA -
  NW965_RS04380 (NW965_04375) coiA 926656..927642 (+) 987 WP_103188523.1 competence protein CoiA family protein Machinery gene
  NW965_RS04385 (NW965_04380) pepF 927690..929498 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NW965_RS04390 (NW965_04385) yjbH 929958..930764 (-) 807 WP_000896696.1 protease adaptor protein YjbH -
  NW965_RS04395 (NW965_04390) - 930787..931152 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  NW965_RS04400 (NW965_04395) - 931256..931849 (-) 594 WP_070002021.1 CYTH domain-containing protein -
  NW965_RS04405 (NW965_04400) - 932035..932382 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38869.47 Da        Isoelectric Point: 9.5881

>NTDB_id=720781 NW965_RS04380 WP_103188523.1 926656..927642(+) (coiA) [Staphylococcus aureus strain 13-G-52]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720781 NW965_RS04380 WP_103188523.1 926656..927642(+) (coiA) [Staphylococcus aureus strain 13-G-52]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

98.476

100

0.985