Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW947_RS10255 Genome accession   NZ_CP102967
Coordinates   2088628..2089023 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-H-61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2083628..2094023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW947_RS10230 (NW947_10230) thiE 2084090..2084731 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NW947_RS10235 (NW947_10235) thiM 2084733..2085524 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  NW947_RS10240 (NW947_10240) thiD 2085508..2086338 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW947_RS10245 (NW947_10245) tenA 2086331..2087020 (-) 690 WP_000396067.1 thiaminase II -
  NW947_RS10250 (NW947_10250) sceD 2087544..2088239 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  NW947_RS10255 (NW947_10255) ssb 2088628..2089023 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW947_RS10260 (NW947_10260) - 2089217..2089657 (+) 441 WP_000846750.1 YwpF-like family protein -
  NW947_RS10265 (NW947_10265) fabZ 2089716..2090156 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW947_RS10270 (NW947_10270) murA 2090190..2091455 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW947_RS10275 (NW947_10275) - 2091566..2091799 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW947_RS10280 (NW947_10280) - 2091931..2092023 (-) 93 WP_001790611.1 hypothetical protein -
  NW947_RS10285 (NW947_10285) - 2092361..2092765 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720766 NW947_RS10255 WP_000932694.1 2088628..2089023(-) (ssb) [Staphylococcus aureus strain 17-H-61]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720766 NW947_RS10255 WP_000932694.1 2088628..2089023(-) (ssb) [Staphylococcus aureus strain 17-H-61]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992