Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW947_RS07840 Genome accession   NZ_CP102967
Coordinates   1626007..1626693 (-) Length   228 a.a.
NCBI ID   WP_258414199.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-H-61     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1621007..1631693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW947_RS07820 (NW947_07820) rpsT 1621921..1622172 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW947_RS07825 (NW947_07825) holA 1622217..1623191 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  NW947_RS07830 (NW947_07830) comEC 1623248..1625449 (-) 2202 WP_258416189.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW947_RS07835 (NW947_07835) - 1625454..1625915 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW947_RS07840 (NW947_07840) comEA 1626007..1626693 (-) 687 WP_258414199.1 ComEA family DNA-binding protein Machinery gene
  NW947_RS07845 (NW947_07845) - 1626733..1627449 (-) 717 WP_258416190.1 class I SAM-dependent methyltransferase -
  NW947_RS07850 (NW947_07850) rsfS 1627452..1627805 (-) 354 WP_124780589.1 ribosome silencing factor -
  NW947_RS07855 (NW947_07855) yqeK 1627806..1628390 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW947_RS07860 (NW947_07860) nadD 1628380..1628949 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW947_RS07865 (NW947_07865) yhbY 1628952..1629242 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW947_RS07870 (NW947_07870) aroE 1629246..1630052 (-) 807 WP_258411176.1 shikimate dehydrogenase -
  NW947_RS07875 (NW947_07875) yqeH 1630066..1631166 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25771.53 Da        Isoelectric Point: 9.6753

>NTDB_id=720755 NW947_RS07840 WP_258414199.1 1626007..1626693(-) (comEA) [Staphylococcus aureus strain 17-H-61]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSESNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMASKDRIVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720755 NW947_RS07840 WP_258414199.1 1626007..1626693(-) (comEA) [Staphylococcus aureus strain 17-H-61]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAGTAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGGCATCTAAGGATAGAAT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.368

100

0.974
  comEA Staphylococcus aureus N315

97.368

100

0.974