Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NW947_RS07615 Genome accession   NZ_CP102967
Coordinates   1581053..1582027 (-) Length   324 a.a.
NCBI ID   WP_258416187.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-H-61     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576053..1587027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW947_RS07575 (NW947_07575) gcvT 1576554..1577645 (-) 1092 WP_258416186.1 glycine cleavage system aminomethyltransferase GcvT -
  NW947_RS07580 (NW947_07580) - 1577804..1578328 (-) 525 WP_001015121.1 shikimate kinase -
  NW947_RS07585 (NW947_07585) - 1578318..1578464 (-) 147 WP_001789879.1 hypothetical protein -
  NW947_RS07590 (NW947_07590) comGF 1578561..1579058 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW947_RS07595 (NW947_07595) comGE 1578976..1579275 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW947_RS07600 (NW947_07600) comGD 1579262..1579708 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW947_RS07605 (NW947_07605) comGC 1579686..1579997 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW947_RS07610 (NW947_07610) comGB 1580011..1581081 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW947_RS07615 (NW947_07615) comGA 1581053..1582027 (-) 975 WP_258416187.1 competence type IV pilus ATPase ComGA Machinery gene
  NW947_RS07620 (NW947_07620) - 1582080..1582703 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW947_RS07625 (NW947_07625) - 1582700..1583029 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW947_RS07630 (NW947_07630) - 1583029..1584015 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW947_RS07635 (NW947_07635) - 1584012..1584215 (-) 204 WP_000087561.1 YqgQ family protein -
  NW947_RS07640 (NW947_07640) - 1584196..1585659 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  NW947_RS07645 (NW947_07645) - 1585671..1586210 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  NW947_RS07650 (NW947_07650) rpmG 1586419..1586568 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36851.87 Da        Isoelectric Point: 8.9956

>NTDB_id=720752 NW947_RS07615 WP_258416187.1 1581053..1582027(-) (comGA) [Staphylococcus aureus strain 17-H-61]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKGVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=720752 NW947_RS07615 WP_258416187.1 1581053..1582027(-) (comGA) [Staphylococcus aureus strain 17-H-61]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGGGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997