Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW947_RS07600 Genome accession   NZ_CP102967
Coordinates   1579262..1579708 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-H-61     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574262..1584708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW947_RS07570 (NW947_07570) gcvPA 1575188..1576534 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW947_RS07575 (NW947_07575) gcvT 1576554..1577645 (-) 1092 WP_258416186.1 glycine cleavage system aminomethyltransferase GcvT -
  NW947_RS07580 (NW947_07580) - 1577804..1578328 (-) 525 WP_001015121.1 shikimate kinase -
  NW947_RS07585 (NW947_07585) - 1578318..1578464 (-) 147 WP_001789879.1 hypothetical protein -
  NW947_RS07590 (NW947_07590) comGF 1578561..1579058 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW947_RS07595 (NW947_07595) comGE 1578976..1579275 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW947_RS07600 (NW947_07600) comGD 1579262..1579708 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW947_RS07605 (NW947_07605) comGC 1579686..1579997 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW947_RS07610 (NW947_07610) comGB 1580011..1581081 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW947_RS07615 (NW947_07615) comGA 1581053..1582027 (-) 975 WP_258416187.1 competence type IV pilus ATPase ComGA Machinery gene
  NW947_RS07620 (NW947_07620) - 1582080..1582703 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW947_RS07625 (NW947_07625) - 1582700..1583029 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW947_RS07630 (NW947_07630) - 1583029..1584015 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW947_RS07635 (NW947_07635) - 1584012..1584215 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720749 NW947_RS07600 WP_001788899.1 1579262..1579708(-) (comGD) [Staphylococcus aureus strain 17-H-61]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720749 NW947_RS07600 WP_001788899.1 1579262..1579708(-) (comGD) [Staphylococcus aureus strain 17-H-61]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1