Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JQN54_RS00570 Genome accession   NZ_AP024305
Coordinates   104569..105600 (-) Length   343 a.a.
NCBI ID   WP_011227816.1    Uniprot ID   Q5SLM9
Organism   Thermus thermophilus strain HB5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99569..110600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS00545 (TthHB5008_01030) pilD 100550..101620 (+) 1071 WP_143590212.1 A24 family peptidase Machinery gene
  JQN54_RS00550 (TthHB5008_01040) - 101658..102161 (+) 504 WP_011227820.1 DUF2939 domain-containing protein -
  JQN54_RS00555 (TthHB5008_01050) - 102175..103095 (+) 921 WP_203971419.1 nitroreductase family protein -
  JQN54_RS00560 (TthHB5008_01060) - 103049..103825 (-) 777 WP_203971421.1 C40 family peptidase -
  JQN54_RS00565 (TthHB5008_01070) - 103826..104584 (-) 759 WP_165446277.1 DUF721 domain-containing protein -
  JQN54_RS00570 (TthHB5008_01080) recF 104569..105600 (-) 1032 WP_011227816.1 DNA replication/repair protein RecF Machinery gene
  JQN54_RS00575 (TthHB5008_01090) - 105602..106774 (-) 1173 WP_011227815.1 MFS transporter -
  JQN54_RS00580 (TthHB5008_01100) pstB 106784..107599 (-) 816 WP_011227814.1 phosphate ABC transporter ATP-binding protein PstB -
  JQN54_RS00585 (TthHB5008_01110) pstA 107593..108807 (-) 1215 WP_018110995.1 phosphate ABC transporter permease PstA -
  JQN54_RS00590 (TthHB5008_01120) pstC 108800..109702 (-) 903 WP_011227812.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37788.64 Da        Isoelectric Point: 8.9580

>NTDB_id=72071 JQN54_RS00570 WP_011227816.1 104569..105600(-) (recF) [Thermus thermophilus strain HB5008]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=72071 JQN54_RS00570 WP_011227816.1 104569..105600(-) (recF) [Thermus thermophilus strain HB5008]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGACCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAACGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZWU
  PDB 8A8J
  PDB 8A93
  PDB 8BPR

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.136

98.251

0.414

Multiple sequence alignment