Detailed information NTG0072070

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JQN54_RS00545
• Genome accession: NZ_AP024305
• Coordinates: 100550..101620 (+)
• Length: 356 a.a.
• NCBI ID: WP_143590212.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain HB5008
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 95550..106620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQN54_RS00525 (TthHB5008_00990)	-	96058..96840 (+)	783	WP_203971417.1	RNA methyltransferase	-
JQN54_RS00530 (TthHB5008_01000)	groES	96938..97243 (+)	306	WP_011174076.1	co-chaperone GroES	-
JQN54_RS00535 (TthHB5008_01010)	groL	97256..98887 (+)	1632	WP_011174077.1	chaperonin GroEL	-
JQN54_RS00540 (TthHB5008_01020)	-	98951..100483 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
JQN54_RS00545 (TthHB5008_01030)	pilD	100550..101620 (+)	1071	WP_143590212.1	A24 family peptidase	Machinery gene
JQN54_RS00550 (TthHB5008_01040)	-	101658..102161 (+)	504	WP_011227820.1	DUF2939 domain-containing protein	-
JQN54_RS00555 (TthHB5008_01050)	-	102175..103095 (+)	921	WP_203971419.1	nitroreductase family protein	-
JQN54_RS00560 (TthHB5008_01060)	-	103049..103825 (-)	777	WP_203971421.1	C40 family peptidase	-
JQN54_RS00565 (TthHB5008_01070)	-	103826..104584 (-)	759	WP_165446277.1	DUF721 domain-containing protein	-
JQN54_RS00570 (TthHB5008_01080)	recF	104569..105600 (-)	1032	WP_011227816.1	DNA replication/repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38017.29 Da
• Isoelectric Point: 7.7135

>NTDB_id=72070 JQN54_RS00545 WP_143590212.1 100550..101620(+) (pilD) [Thermus thermophilus strain HB5008]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=72070 JQN54_RS00545 WP_143590212.1 100550..101620(+) (pilD) [Thermus thermophilus strain HB5008]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (207-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.17	100	0.486