Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PUW62_RS07660 Genome accession   NZ_CP118046
Coordinates   1533393..1533989 (-) Length   198 a.a.
NCBI ID   WP_003023742.1    Uniprot ID   A0A412PNE3
Organism   Streptococcus anginosus strain VSI52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528393..1538989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS07635 (PUW62_07635) - 1528782..1529462 (-) 681 WP_164232040.1 TIGR02206 family membrane protein -
  PUW62_RS07640 (PUW62_07640) - 1529469..1530167 (-) 699 WP_024052820.1 TIGR02206 family membrane protein -
  PUW62_RS07645 (PUW62_07645) - 1530171..1530722 (-) 552 WP_024052821.1 DUF1697 domain-containing protein -
  PUW62_RS07650 (PUW62_07650) murF 1530712..1532082 (-) 1371 WP_024052822.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  PUW62_RS07655 (PUW62_07655) - 1532214..1533260 (-) 1047 WP_024052823.1 D-alanine--D-alanine ligase -
  PUW62_RS07660 (PUW62_07660) recR 1533393..1533989 (-) 597 WP_003023742.1 recombination mediator RecR Machinery gene
  PUW62_RS07665 (PUW62_07665) pbp2b 1534000..1536060 (-) 2061 WP_180364008.1 penicillin-binding protein PBP2B -
  PUW62_RS07670 (PUW62_07670) - 1536410..1536955 (-) 546 WP_150890984.1 hypothetical protein -
  PUW62_RS07675 (PUW62_07675) HI0659 1537047..1537340 (-) 294 WP_150890982.1 helix-turn-helix transcriptional regulator Machinery gene
  PUW62_RS07680 (PUW62_07680) - 1537330..1537695 (-) 366 WP_006268450.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PUW62_RS07685 (PUW62_07685) - 1537761..1538036 (-) 276 WP_150890980.1 terminase small subunit -
  PUW62_RS07690 (PUW62_07690) - 1538116..1538346 (-) 231 WP_022525741.1 hypothetical protein -
  PUW62_RS07695 (PUW62_07695) - 1538578..1538988 (-) 411 WP_150890979.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21620.67 Da        Isoelectric Point: 4.3503

>NTDB_id=720692 PUW62_RS07660 WP_003023742.1 1533393..1533989(-) (recR) [Streptococcus anginosus strain VSI52]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=720692 PUW62_RS07660 WP_003023742.1 1533393..1533989(-) (recR) [Streptococcus anginosus strain VSI52]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCGAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATAATCCTTGTGCTATCTGCACCGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTATCTGCTATGGAAAATATTCAAGAATACCATGGTTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACACGGTTGATGGATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCAGATGGGGAAGCGACTTCCATGTATATCTCGAGGGTGTTA
AAGCCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGACATTGAATATGCAGACGAAGTAAC
GCTGCTTCGGGCTATTGAGAATCGTACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PNE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48