Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW941_RS08045 Genome accession   NZ_CP102963
Coordinates   1659564..1660250 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 40-B-50     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654564..1665250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW941_RS08025 (NW941_08055) rpsT 1655478..1655729 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW941_RS08030 (NW941_08060) holA 1655774..1656748 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  NW941_RS08035 (NW941_08065) comEC 1656805..1659006 (-) 2202 WP_258411698.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW941_RS08040 (NW941_08070) - 1659011..1659472 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW941_RS08045 (NW941_08075) comEA 1659564..1660250 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  NW941_RS08050 (NW941_08080) - 1660290..1661006 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW941_RS08055 (NW941_08085) rsfS 1661009..1661362 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW941_RS08060 (NW941_08090) yqeK 1661363..1661947 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW941_RS08065 (NW941_08095) nadD 1661937..1662506 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW941_RS08070 (NW941_08100) yhbY 1662509..1662799 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW941_RS08075 (NW941_08105) aroE 1662803..1663609 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  NW941_RS08080 (NW941_08110) yqeH 1663623..1664723 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=720671 NW941_RS08045 WP_072353822.1 1659564..1660250(-) (comEA) [Staphylococcus aureus strain 40-B-50]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720671 NW941_RS08045 WP_072353822.1 1659564..1660250(-) (comEA) [Staphylococcus aureus strain 40-B-50]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978