Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW941_RS02430 Genome accession   NZ_CP102963
Coordinates   524810..525379 (+) Length   189 a.a.
NCBI ID   WP_258410433.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 40-B-50     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 519810..530379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW941_RS02405 (NW941_02420) cysE 521023..521670 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW941_RS02410 (NW941_02425) cysS 521654..523054 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  NW941_RS02415 (NW941_02430) - 523047..523451 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW941_RS02420 (NW941_02435) rlmB 523459..524205 (+) 747 WP_258415186.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW941_RS02425 (NW941_02440) - 524205..524729 (+) 525 WP_258411987.1 NYN domain-containing protein -
  NW941_RS02430 (NW941_02445) sigH 524810..525379 (+) 570 WP_258410433.1 RNA polymerase sigma factor Regulator
  NW941_RS02435 (NW941_02450) rpmG 525494..525637 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW941_RS02440 (NW941_02455) secE 525693..525875 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW941_RS02445 (NW941_02460) nusG 525888..526436 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW941_RS02450 (NW941_02465) rplK 526617..527039 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW941_RS02455 (NW941_02470) rplA 527247..527939 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW941_RS02460 (NW941_02475) rplJ 528211..528711 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW941_RS02465 (NW941_02480) rplL 528754..529122 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW941_RS02470 (NW941_02485) - 529297..529905 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=720651 NW941_RS02430 WP_258410433.1 524810..525379(+) (sigH) [Staphylococcus aureus strain 40-B-50]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720651 NW941_RS02430 WP_258410433.1 524810..525379(+) (sigH) [Staphylococcus aureus strain 40-B-50]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGATCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATAAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

98.942

100

0.989