Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW971_RS10785 Genome accession   NZ_CP102962
Coordinates   2165073..2165468 (-) Length   131 a.a.
NCBI ID   WP_258464422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2160073..2170468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW971_RS10760 (NW971_10760) thiE 2160534..2161175 (-) 642 WP_111762527.1 thiamine phosphate synthase -
  NW971_RS10765 (NW971_10765) thiM 2161177..2161968 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  NW971_RS10770 (NW971_10770) thiD 2161952..2162782 (-) 831 WP_258464420.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW971_RS10775 (NW971_10775) tenA 2162775..2163464 (-) 690 WP_258464421.1 thiaminase II -
  NW971_RS10780 (NW971_10780) sceD 2163989..2164684 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  NW971_RS10785 (NW971_10785) ssb 2165073..2165468 (-) 396 WP_258464422.1 single-stranded DNA-binding protein Machinery gene
  NW971_RS10790 (NW971_10790) - 2165662..2166102 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW971_RS10795 (NW971_10795) fabZ 2166159..2166599 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW971_RS10800 (NW971_10800) murA 2166633..2167898 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW971_RS10805 (NW971_10805) - 2168009..2168242 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW971_RS10810 (NW971_10810) - 2168374..2168466 (-) 93 WP_031789435.1 hypothetical protein -
  NW971_RS10815 (NW971_10815) - 2168837..2169241 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15036.11 Da        Isoelectric Point: 5.6824

>NTDB_id=720641 NW971_RS10785 WP_258464422.1 2165073..2165468(-) (ssb) [Staphylococcus aureus strain 16CS0212]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGIIGQMRSRK
YDKDGQTHFVTELYVETIKFISPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720641 NW971_RS10785 WP_258464422.1 2165073..2165468(-) (ssb) [Staphylococcus aureus strain 16CS0212]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAATTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATATCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977