Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW973_RS08190 Genome accession   NZ_CP102961
Coordinates   1683448..1684134 (-) Length   228 a.a.
NCBI ID   WP_258410046.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678448..1689134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS08170 (NW973_08170) rpsT 1679362..1679613 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW973_RS08175 (NW973_08175) holA 1679658..1680632 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NW973_RS08180 (NW973_08180) comEC 1680689..1682890 (-) 2202 WP_258410699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW973_RS08185 (NW973_08185) - 1682895..1683356 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW973_RS08190 (NW973_08190) comEA 1683448..1684134 (-) 687 WP_258410046.1 ComEA family DNA-binding protein Machinery gene
  NW973_RS08195 (NW973_08195) - 1684174..1684890 (-) 717 WP_258410047.1 class I SAM-dependent methyltransferase -
  NW973_RS08200 (NW973_08200) rsfS 1684893..1685246 (-) 354 WP_001088022.1 ribosome silencing factor -
  NW973_RS08205 (NW973_08205) yqeK 1685247..1685831 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW973_RS08210 (NW973_08210) nadD 1685821..1686390 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW973_RS08215 (NW973_08215) yhbY 1686393..1686683 (-) 291 WP_258410048.1 ribosome assembly RNA-binding protein YhbY -
  NW973_RS08220 (NW973_08220) aroE 1686687..1687493 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  NW973_RS08225 (NW973_08225) yqeH 1687507..1688607 (-) 1101 WP_258410049.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25903.60 Da        Isoelectric Point: 9.5273

>NTDB_id=720588 NW973_RS08190 WP_258410046.1 1683448..1684134(-) (comEA) [Staphylococcus aureus strain 03-RR-88]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720588 NW973_RS08190 WP_258410046.1 1683448..1684134(-) (comEA) [Staphylococcus aureus strain 03-RR-88]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGTACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.123

100

0.991
  comEA Staphylococcus aureus MW2

97.368

100

0.974