Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW973_RS02470 Genome accession   NZ_CP102961
Coordinates   525359..525928 (+) Length   189 a.a.
NCBI ID   WP_103188362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 520359..530928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS02445 (NW973_02445) cysE 521572..522219 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW973_RS02450 (NW973_02450) cysS 522203..523603 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  NW973_RS02455 (NW973_02455) - 523596..524000 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW973_RS02460 (NW973_02460) rlmB 524008..524754 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW973_RS02465 (NW973_02465) - 524754..525278 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW973_RS02470 (NW973_02470) sigH 525359..525928 (+) 570 WP_103188362.1 RNA polymerase sigma factor Regulator
  NW973_RS02475 (NW973_02475) rpmG 526043..526186 (+) 144 WP_103188361.1 50S ribosomal protein L33 -
  NW973_RS02480 (NW973_02480) secE 526242..526424 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW973_RS02485 (NW973_02485) nusG 526437..526985 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW973_RS02490 (NW973_02490) rplK 527166..527588 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW973_RS02495 (NW973_02495) rplA 527796..528488 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW973_RS02500 (NW973_02500) rplJ 528760..529260 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW973_RS02505 (NW973_02505) rplL 529303..529671 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW973_RS02510 (NW973_02510) - 529846..530454 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23051.87 Da        Isoelectric Point: 9.6871

>NTDB_id=720568 NW973_RS02470 WP_103188362.1 525359..525928(+) (sigH) [Staphylococcus aureus strain 03-RR-88]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRGKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720568 NW973_RS02470 WP_103188362.1 525359..525928(+) (sigH) [Staphylococcus aureus strain 03-RR-88]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGAGGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979