Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NW949_RS05825 Genome accession   NZ_CP102960
Coordinates   1208204..1209076 (+) Length   290 a.a.
NCBI ID   WP_258412038.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 07-G-D     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1203204..1214076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW949_RS05805 (NW949_05805) sucC 1203319..1204485 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  NW949_RS05810 (NW949_05810) sucD 1204507..1205415 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  NW949_RS05815 (NW949_05815) - 1205642..1206760 (+) 1119 WP_258412036.1 LysM peptidoglycan-binding domain-containing protein -
  NW949_RS05820 (NW949_05820) fmhC 1206788..1208032 (+) 1245 WP_258412037.1 FemA/FemB family glycyltransferase FmhC -
  NW949_RS05825 (NW949_05825) dprA 1208204..1209076 (+) 873 WP_258412038.1 DNA-processing protein DprA Machinery gene
  NW949_RS05830 (NW949_05830) topA 1209250..1211325 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  NW949_RS05835 (NW949_05835) trmFO 1211481..1212788 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33535.91 Da        Isoelectric Point: 9.4104

>NTDB_id=720533 NW949_RS05825 WP_258412038.1 1208204..1209076(+) (dprA) [Staphylococcus aureus strain 07-G-D]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIELINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=720533 NW949_RS05825 WP_258412038.1 1208204..1209076(+) (dprA) [Staphylococcus aureus strain 07-G-D]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CGAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983