Detailed information NTG0720530

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: PUW57_RS10565
• Genome accession: NZ_CP118043
• Coordinates: 2067215..2068324 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae strain VSI63
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2062215..2073324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUW57_RS10540 (PUW57_10540)	-	2062588..2063427 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
PUW57_RS10545 (PUW57_10545)	pgsA	2063427..2063969 (-)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
PUW57_RS10550 (PUW57_10550)	-	2064092..2065375 (-)	1284	WP_000217754.1	pitrilysin family protein	-
PUW57_RS10555 (PUW57_10555)	-	2065377..2066621 (-)	1245	WP_000706188.1	pitrilysin family protein	-
PUW57_RS10560 (PUW57_10560)	yaaA	2066860..2067212 (+)	353	Protein_2011	S4 domain-containing protein YaaA	-
PUW57_RS10565 (PUW57_10565)	recF	2067215..2068324 (+)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
PUW57_RS10570 (PUW57_10570)	-	2068336..2069202 (-)	867	WP_000398683.1	GRP family sugar transporter	-
PUW57_RS10575 (PUW57_10575)	-	2069258..2069920 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
PUW57_RS10580 (PUW57_10580)	guaB	2069995..2071476 (-)	1482	WP_274999076.1	IMP dehydrogenase	-
PUW57_RS10585 (PUW57_10585)	-	2071633..2072118 (-)	486	WP_001034429.1	arginine repressor	-
PUW57_RS10590 (PUW57_10590)	-	2072128..2072808 (-)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=720530 PUW57_RS10565 WP_000264863.1 2067215..2068324(+) (recF) [Streptococcus agalactiae strain VSI63]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=720530 PUW57_RS10565 WP_000264863.1 2067215..2068324(+) (recF) [Streptococcus agalactiae strain VSI63]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444