Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW949_RS02555 Genome accession   NZ_CP102960
Coordinates   540380..540949 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 07-G-D     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 535380..545949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW949_RS02530 (NW949_02530) cysE 536593..537240 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW949_RS02535 (NW949_02535) cysS 537224..538624 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  NW949_RS02540 (NW949_02540) - 538617..539021 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW949_RS02545 (NW949_02545) rlmB 539029..539775 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW949_RS02550 (NW949_02550) - 539775..540299 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW949_RS02555 (NW949_02555) sigH 540380..540949 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  NW949_RS02560 (NW949_02560) rpmG 541064..541207 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW949_RS02565 (NW949_02565) secE 541263..541445 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW949_RS02570 (NW949_02570) nusG 541458..542006 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW949_RS02575 (NW949_02575) rplK 542187..542609 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW949_RS02580 (NW949_02580) rplA 542817..543509 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW949_RS02585 (NW949_02585) rplJ 543781..544281 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  NW949_RS02590 (NW949_02590) rplL 544324..544692 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW949_RS02595 (NW949_02595) - 544867..545475 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=720527 NW949_RS02555 WP_000872876.1 540380..540949(+) (sigH) [Staphylococcus aureus strain 07-G-D]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720527 NW949_RS02555 WP_000872876.1 540380..540949(+) (sigH) [Staphylococcus aureus strain 07-G-D]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984