Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW979_RS07600 Genome accession   NZ_CP102959
Coordinates   1612440..1613126 (-) Length   228 a.a.
NCBI ID   WP_258413394.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-G-51     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607440..1618126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW979_RS07580 (NW979_07580) rpsT 1608354..1608605 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW979_RS07585 (NW979_07585) holA 1608650..1609624 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  NW979_RS07590 (NW979_07590) comEC 1609681..1611882 (-) 2202 WP_258413393.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW979_RS07595 (NW979_07595) - 1611887..1612348 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW979_RS07600 (NW979_07600) comEA 1612440..1613126 (-) 687 WP_258413394.1 ComEA family DNA-binding protein Machinery gene
  NW979_RS07605 (NW979_07605) - 1613166..1613882 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW979_RS07610 (NW979_07610) rsfS 1613885..1614238 (-) 354 WP_001088022.1 ribosome silencing factor -
  NW979_RS07615 (NW979_07615) yqeK 1614239..1614823 (-) 585 WP_258413395.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW979_RS07620 (NW979_07620) nadD 1614813..1615382 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW979_RS07625 (NW979_07625) yhbY 1615385..1615675 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  NW979_RS07630 (NW979_07630) aroE 1615679..1616485 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  NW979_RS07635 (NW979_07635) yqeH 1616499..1617599 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25904.55 Da        Isoelectric Point: 9.5273

>NTDB_id=720506 NW979_RS07600 WP_258413394.1 1612440..1613126(-) (comEA) [Staphylococcus aureus strain 12-G-51]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLSDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720506 NW979_RS07600 WP_258413394.1 1612440..1613126(-) (comEA) [Staphylococcus aureus strain 12-G-51]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961