Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PUW57_RS06710 Genome accession   NZ_CP118043
Coordinates   1283609..1285390 (-) Length   593 a.a.
NCBI ID   WP_001003958.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain VSI63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278609..1290390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW57_RS06690 (PUW57_06690) - 1278882..1279465 (-) 584 Protein_1239 uracil-DNA glycosylase family protein -
  PUW57_RS06695 (PUW57_06695) pepV 1279562..1280968 (-) 1407 WP_000150952.1 dipeptidase PepV -
  PUW57_RS06700 (PUW57_06700) - 1281015..1281616 (-) 602 Protein_1241 nitroreductase family protein -
  PUW57_RS06705 (PUW57_06705) - 1281786..1283567 (+) 1782 WP_000942626.1 glycerophosphodiester phosphodiesterase -
  PUW57_RS06710 (PUW57_06710) uvrC 1283609..1285390 (-) 1782 WP_001003958.1 excinuclease ABC subunit UvrC Machinery gene
  PUW57_RS06715 (PUW57_06715) - 1285549..1286316 (+) 768 WP_000567585.1 epoxyqueuosine reductase QueH -
  PUW57_RS06720 (PUW57_06720) - 1286376..1287716 (-) 1341 WP_000285045.1 MATE family efflux transporter -
  PUW57_RS06725 (PUW57_06725) - 1287816..1288232 (-) 417 WP_000245056.1 VOC family protein -
  PUW57_RS06730 (PUW57_06730) - 1288236..1288733 (-) 498 WP_000582587.1 hypothetical protein -
  PUW57_RS06735 (PUW57_06735) - 1288955..1289551 (+) 597 WP_000162275.1 Ltp family lipoprotein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68342.89 Da        Isoelectric Point: 9.5911

>NTDB_id=720495 PUW57_RS06710 WP_001003958.1 1283609..1285390(-) (uvrC) [Streptococcus agalactiae strain VSI63]
MNELIKHKLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNTKTELLVSEIEDFEYIVTTSNTEALLLEIN
LIQENMPKYNIRLKDDKSYPYIKITNERYPRLMITRQVKKSDGTYFGPYPDSGAATEIKRLLDRLFPFKKCTNPANKVCF
YYHLGQCNAHTVCQTNKAYWDSLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQ
DMKDRDVFGYFVNKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKEVFIPQDIDAKSVETI
VGCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKDIRKTHGAIENLGNLLNIPKPVRIEAFDNSNIQGTSPVAAMVV
FVNGKPSKKDYRKFKIKTVIGPDDYASMREVIHRRYSRVLKDGLTPPDLIVIDGGQGQVNIARDVIENQLGLAIPIAGLQ
KNDKHQTHELLFGDPLEVVELPRNSEEFFLLHRIQDEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSL
PNIQKADIEDIIMCGIPRTVAESLRDSLNDPPK

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=720495 PUW57_RS06710 WP_001003958.1 1283609..1285390(-) (uvrC) [Streptococcus agalactiae strain VSI63]
ATGAATGAACTGATTAAACATAAGCTAGAATTGTTACCAGACAGTCCTGGTTGTTACCTTCATAAAGATAAGAATGGGAC
AATTATTTATGTAGGTAAGGCTAAAAATCTTAAGAATCGTGTGAAAAGTTATTTTCATGGGAGTCATAATACTAAGACAG
AACTTTTGGTCTCTGAGATTGAAGACTTTGAATACATTGTGACAACATCTAATACCGAAGCTCTATTATTGGAAATTAAT
TTAATCCAAGAAAATATGCCGAAGTATAATATTCGATTGAAAGATGATAAGTCTTACCCATATATCAAAATAACAAATGA
ACGTTATCCTCGTCTTATGATTACACGTCAAGTAAAAAAATCAGATGGCACTTATTTTGGACCTTATCCGGATTCTGGGG
CAGCAACTGAGATTAAGCGGTTACTAGATAGGCTCTTTCCTTTTAAGAAATGTACTAATCCAGCAAATAAAGTATGCTTT
TATTATCATTTAGGGCAATGCAATGCACATACAGTTTGTCAAACTAATAAAGCTTATTGGGATAGTCTGAGAGAAGATGT
AAAACAGTTTCTTAATGGTAAAGATAATAAAATTGTTAACGGATTAACTGAAAAAATGAAGAGCGCTGCTATGACTATGG
AATTTGAGCGTGCGGCTGAATATCGAGATTTGATCGAAGCAATTAGTTTGTTGCGTACTAAGCAGCGTGTTATTCATCAA
GATATGAAGGATAGAGATGTTTTTGGTTATTTCGTTAATAAGGGTTGGATGTGTGTACAGGTCTTTTTTGTTCGAAATGG
AAAATTGATTCAGCGTGACGTGAATATGTTTCCTTATTATAATGAACCAGAGGAAGATTTTCTAACTTACATAGGGCAAT
TTTATCAAGATACAAAACATTTTCTACCCAAAGAAGTCTTTATTCCACAGGATATTGATGCTAAGTCGGTTGAAACAATT
GTAGGCTGTAAGATTGTTAAACCACAACGTGGTGAAAAGAAACAGTTAGTAAATCTGGCAATAAAAAATGCTCGTGTCAG
TTTACAACAGAAGTTTGACTTACTGGAAAAAGATATTCGTAAAACTCATGGGGCAATTGAAAATTTAGGTAATCTTCTTA
ATATCCCTAAACCAGTACGCATAGAAGCATTTGATAATTCCAATATTCAAGGGACAAGTCCAGTAGCTGCTATGGTGGTA
TTTGTGAATGGAAAGCCAAGTAAAAAAGACTATCGAAAGTTTAAAATTAAGACTGTTATCGGACCAGATGATTATGCTAG
TATGAGAGAAGTCATTCATCGGCGTTATAGTAGGGTTTTAAAAGATGGCTTGACACCTCCGGACTTGATTGTAATTGATG
GTGGTCAGGGGCAAGTAAATATAGCGCGTGATGTTATTGAGAACCAATTAGGTTTAGCCATACCTATTGCAGGTTTGCAA
AAGAATGATAAACACCAAACACATGAATTACTTTTTGGAGATCCTTTAGAAGTAGTAGAATTACCGCGTAATTCAGAAGA
ATTTTTCTTACTTCACCGTATTCAAGATGAGGTACATCGTTTTGCTATTACTTTTCATCGTCAATTACGCTCCAAAAATT
CCTTTTCTTCAAAATTAGATGGTATCACTGGGTTGGGACCAAAACGTAAACAATTGCTAATGAAACATTTTAAAAGCTTA
CCTAATATCCAAAAAGCTGATATTGAGGACATTATTATGTGTGGTATTCCTAGGACAGTTGCAGAAAGTCTCCGAGATTC
TCTTAATGATCCTCCTAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.401

99.325

0.759
  uvrC Streptococcus pneumoniae R6

76.061

99.325

0.755
  uvrC Streptococcus pneumoniae D39

76.061

99.325

0.755