Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW979_RS04485 Genome accession   NZ_CP102959
Coordinates   948456..949442 (+) Length   328 a.a.
NCBI ID   WP_258413793.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-G-51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 943456..954442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW979_RS04460 (NW979_04460) opp4B 943669..944631 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  NW979_RS04465 (NW979_04465) opp4C 944643..945524 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  NW979_RS04470 (NW979_04470) trpS 945566..946555 (-) 990 WP_130163217.1 tryptophan--tRNA ligase -
  NW979_RS04475 (NW979_04475) spxA 946850..947245 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW979_RS04480 (NW979_04480) mecA 947616..948335 (+) 720 WP_258413792.1 adaptor protein MecA -
  NW979_RS04485 (NW979_04485) coiA 948456..949442 (+) 987 WP_258413793.1 competence protein CoiA family protein Machinery gene
  NW979_RS04490 (NW979_04490) pepF 949490..951298 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NW979_RS04495 (NW979_04495) yjbH 951758..952564 (-) 807 WP_000896696.1 protease adaptor protein YjbH -
  NW979_RS04500 (NW979_04500) - 952587..952952 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  NW979_RS04505 (NW979_04505) - 953056..953649 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  NW979_RS04510 (NW979_04510) - 953835..954182 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.50 Da        Isoelectric Point: 9.7166

>NTDB_id=720491 NW979_RS04485 WP_258413793.1 948456..949442(+) (coiA) [Staphylococcus aureus strain 12-G-51]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720491 NW979_RS04485 WP_258413793.1 948456..949442(+) (coiA) [Staphylococcus aureus strain 12-G-51]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.695

100

0.997
  coiA Staphylococcus aureus N315

97.866

100

0.979