Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW969_RS07110 Genome accession   NZ_CP102958
Coordinates   1518800..1519297 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15-G-54     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513800..1524297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW969_RS07085 (NW969_07085) gcvPB 1513962..1515434 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW969_RS07090 (NW969_07090) gcvPA 1515427..1516773 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW969_RS07095 (NW969_07095) gcvT 1516793..1517884 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW969_RS07100 (NW969_07100) - 1518043..1518567 (-) 525 WP_001015121.1 shikimate kinase -
  NW969_RS07105 (NW969_07105) - 1518557..1518703 (-) 147 WP_001789879.1 hypothetical protein -
  NW969_RS07110 (NW969_07110) comGF 1518800..1519297 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW969_RS07115 (NW969_07115) comGE 1519215..1519514 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW969_RS07120 (NW969_07120) comGD 1519501..1519947 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW969_RS07125 (NW969_07125) comGC 1519925..1520236 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW969_RS07130 (NW969_07130) comGB 1520250..1521320 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW969_RS07135 (NW969_07135) comGA 1521292..1522266 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW969_RS07140 (NW969_07140) - 1522318..1522941 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW969_RS07145 (NW969_07145) - 1522938..1523267 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW969_RS07150 (NW969_07150) - 1523267..1524253 (-) 987 WP_258413885.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=720457 NW969_RS07110 WP_001789864.1 1518800..1519297(-) (comGF) [Staphylococcus aureus strain 15-G-54]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=720457 NW969_RS07110 WP_001789864.1 1518800..1519297(-) (comGF) [Staphylococcus aureus strain 15-G-54]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964