Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW959_RS09940 Genome accession   NZ_CP102957
Coordinates   2045746..2046141 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-H-62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2040746..2051141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW959_RS09915 (NW959_09915) thiE 2041345..2041986 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NW959_RS09920 (NW959_09920) thiM 2041988..2042779 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  NW959_RS09925 (NW959_09925) thiD 2042763..2043593 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW959_RS09930 (NW959_09930) tenA 2043586..2044275 (-) 690 WP_000396067.1 thiaminase II -
  NW959_RS09935 (NW959_09935) sceD 2044662..2045357 (-) 696 WP_258472968.1 lytic transglycosylase SceD -
  NW959_RS09940 (NW959_09940) ssb 2045746..2046141 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW959_RS09945 (NW959_09945) - 2046335..2046775 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW959_RS09950 (NW959_09950) fabZ 2046832..2047272 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW959_RS09955 (NW959_09955) murA 2047306..2048571 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW959_RS09960 (NW959_09960) - 2048682..2048915 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW959_RS09965 (NW959_09965) - 2049047..2049145 (-) 99 WP_258473643.1 hypothetical protein -
  NW959_RS09970 (NW959_09970) - 2049453..2050652 (-) 1200 WP_289623132.1 IS110 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720434 NW959_RS09940 WP_000932694.1 2045746..2046141(-) (ssb) [Staphylococcus aureus strain 18-H-62]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720434 NW959_RS09940 WP_000932694.1 2045746..2046141(-) (ssb) [Staphylococcus aureus strain 18-H-62]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992