Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW959_RS07525 Genome accession   NZ_CP102957
Coordinates   1585028..1585714 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-H-62     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580028..1590714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW959_RS07505 (NW959_07505) rpsT 1580942..1581193 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW959_RS07510 (NW959_07510) holA 1581238..1582212 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  NW959_RS07515 (NW959_07515) comEC 1582269..1584470 (-) 2202 WP_258414908.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW959_RS07520 (NW959_07520) - 1584475..1584936 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW959_RS07525 (NW959_07525) comEA 1585028..1585714 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  NW959_RS07530 (NW959_07530) - 1585754..1586470 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW959_RS07535 (NW959_07535) rsfS 1586473..1586826 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW959_RS07540 (NW959_07540) yqeK 1586827..1587411 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW959_RS07545 (NW959_07545) nadD 1587401..1587970 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW959_RS07550 (NW959_07550) yhbY 1587973..1588263 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW959_RS07555 (NW959_07555) aroE 1588267..1589073 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  NW959_RS07560 (NW959_07560) yqeH 1589087..1590187 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=720423 NW959_RS07525 WP_001788928.1 1585028..1585714(-) (comEA) [Staphylococcus aureus strain 18-H-62]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720423 NW959_RS07525 WP_001788928.1 1585028..1585714(-) (comEA) [Staphylococcus aureus strain 18-H-62]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969