Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   NW959_RS07295 Genome accession   NZ_CP102957
Coordinates   1538977..1540047 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-H-62     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533977..1545047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW959_RS07255 (NW959_07255) gcvPA 1534154..1535500 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW959_RS07260 (NW959_07260) gcvT 1535520..1536611 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW959_RS07265 (NW959_07265) - 1536770..1537294 (-) 525 WP_001015121.1 shikimate kinase -
  NW959_RS07270 (NW959_07270) - 1537284..1537430 (-) 147 WP_001789879.1 hypothetical protein -
  NW959_RS07275 (NW959_07275) comGF 1537527..1538024 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW959_RS07280 (NW959_07280) comGE 1537942..1538241 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW959_RS07285 (NW959_07285) comGD 1538228..1538674 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW959_RS07290 (NW959_07290) comGC 1538652..1538963 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW959_RS07295 (NW959_07295) comGB 1538977..1540047 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW959_RS07300 (NW959_07300) comGA 1540019..1540993 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW959_RS07305 (NW959_07305) - 1541045..1541668 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW959_RS07310 (NW959_07310) - 1541665..1541993 (-) 329 Protein_1432 MTH1187 family thiamine-binding protein -
  NW959_RS07315 (NW959_07315) - 1541993..1542979 (-) 987 WP_258413885.1 ROK family glucokinase -
  NW959_RS07320 (NW959_07320) - 1542976..1543179 (-) 204 WP_258410696.1 YqgQ family protein -
  NW959_RS07325 (NW959_07325) - 1543160..1544623 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=720419 NW959_RS07295 WP_000776422.1 1538977..1540047(-) (comGB) [Staphylococcus aureus strain 18-H-62]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=720419 NW959_RS07295 WP_000776422.1 1538977..1540047(-) (comGB) [Staphylococcus aureus strain 18-H-62]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCTTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTGTATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1