Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   NW959_RS04560 Genome accession   NZ_CP102957
Coordinates   960655..961224 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain 18-H-62     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 955655..966224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW959_RS04540 (NW959_04540) - 957160..958518 (+) 1359 WP_258413306.1 TrkH family potassium uptake protein -
  NW959_RS04545 (NW959_04545) - 958657..960168 (+) 1512 WP_258414804.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  NW959_RS04560 (NW959_04560) comK/comK1 960655..961224 (-) 570 WP_000287265.1 competence protein ComK Regulator
  NW959_RS04565 (NW959_04565) - 961434..961652 (+) 219 WP_258414805.1 IDEAL domain-containing protein -
  NW959_RS04570 (NW959_04570) - 961733..962719 (-) 987 WP_000668823.1 lipoate--protein ligase -
  NW959_RS04575 (NW959_04575) - 962918..963094 (+) 177 WP_000214898.1 YkvS family protein -
  NW959_RS04580 (NW959_04580) - 963109..963711 (+) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  NW959_RS04585 (NW959_04585) - 964028..964090 (+) 63 WP_228764722.1 hypothetical protein -
  NW959_RS04590 (NW959_04590) - 964728..965012 (+) 285 WP_258410543.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=720409 NW959_RS04560 WP_000287265.1 960655..961224(-) (comK/comK1) [Staphylococcus aureus strain 18-H-62]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720409 NW959_RS04560 WP_000287265.1 960655..961224(-) (comK/comK1) [Staphylococcus aureus strain 18-H-62]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGCAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTTACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1