Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW981_RS02560 Genome accession   NZ_CP102956
Coordinates   541945..542514 (+) Length   189 a.a.
NCBI ID   WP_258410433.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 26-G-G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 536945..547514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW981_RS02535 (NW981_02535) cysE 538158..538805 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW981_RS02540 (NW981_02540) cysS 538789..540189 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  NW981_RS02545 (NW981_02545) - 540182..540586 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW981_RS02550 (NW981_02550) rlmB 540594..541340 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW981_RS02555 (NW981_02555) - 541340..541864 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW981_RS02560 (NW981_02560) sigH 541945..542514 (+) 570 WP_258410433.1 RNA polymerase sigma factor Regulator
  NW981_RS02565 (NW981_02565) rpmG 542629..542772 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW981_RS02570 (NW981_02570) secE 542828..543010 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW981_RS02575 (NW981_02575) nusG 543023..543571 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW981_RS02580 (NW981_02580) rplK 543752..544174 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW981_RS02585 (NW981_02585) rplA 544382..545074 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW981_RS02590 (NW981_02590) rplJ 545346..545846 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW981_RS02595 (NW981_02595) rplL 545889..546257 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW981_RS02600 (NW981_02600) - 546432..547040 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=720362 NW981_RS02560 WP_258410433.1 541945..542514(+) (sigH) [Staphylococcus aureus strain 26-G-G]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720362 NW981_RS02560 WP_258410433.1 541945..542514(+) (sigH) [Staphylococcus aureus strain 26-G-G]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGATCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATAAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

98.942

100

0.989