Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW961_RS04520 Genome accession   NZ_CP102955
Coordinates   944462..945448 (+) Length   328 a.a.
NCBI ID   WP_258411056.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28-G-I     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 939462..950448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW961_RS04495 (NW961_04495) opp4B 939675..940637 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  NW961_RS04500 (NW961_04500) opp4C 940649..941530 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  NW961_RS04505 (NW961_04505) trpS 941572..942561 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW961_RS04510 (NW961_04510) spxA 942856..943251 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW961_RS04515 (NW961_04515) mecA 943622..944341 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW961_RS04520 (NW961_04520) coiA 944462..945448 (+) 987 WP_258411056.1 competence protein CoiA family protein Machinery gene
  NW961_RS04525 (NW961_04525) pepF 945496..947304 (+) 1809 WP_258413303.1 oligoendopeptidase F -
  NW961_RS04530 (NW961_04530) yjbH 947764..948570 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW961_RS04535 (NW961_04535) - 948593..948958 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW961_RS04540 (NW961_04540) - 949062..949655 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW961_RS04545 (NW961_04545) - 949841..950188 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38779.46 Da        Isoelectric Point: 9.6054

>NTDB_id=720326 NW961_RS04520 WP_258411056.1 944462..945448(+) (coiA) [Staphylococcus aureus strain 28-G-I]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKLGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGFIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720326 NW961_RS04520 WP_258411056.1 944462..945448(+) (coiA) [Staphylococcus aureus strain 28-G-I]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAACTGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTTTATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTGGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

97.866

100

0.979
  coiA Staphylococcus aureus MW2

97.256

100

0.973