Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PT280_RS17925 Genome accession   NZ_CP118014
Coordinates   3627524..3628153 (-) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli strain B-766     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622524..3633153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT280_RS17910 helD 3622766..3624820 (-) 2055 WP_001349949.1 DNA helicase IV -
  PT280_RS17915 yccF 3624943..3625389 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PT280_RS17920 yccS 3625399..3627561 (+) 2163 WP_000875023.1 YccS family putative transporter -
  PT280_RS17925 sxy/tfoX 3627524..3628153 (-) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PT280_RS17930 sulA 3628372..3628881 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PT280_RS17935 ompA 3629238..3630278 (+) 1041 WP_000750416.1 porin OmpA -
  PT280_RS17940 matP 3630354..3630806 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PT280_RS17945 ycbZ 3630992..3632752 (+) 1761 WP_000156524.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=720298 PT280_RS17925 WP_000793791.1 3627524..3628153(-) (sxy/tfoX) [Escherichia coli strain B-766]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=720298 PT280_RS17925 WP_000793791.1 3627524..3628153(-) (sxy/tfoX) [Escherichia coli strain B-766]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99