Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW977_RS10020 Genome accession   NZ_CP102953
Coordinates   2061788..2062183 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 32-T-13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2056788..2067183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW977_RS09995 (NW977_09995) thiE 2057145..2057786 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NW977_RS10000 (NW977_10000) thiM 2057788..2058579 (-) 792 WP_258412615.1 hydroxyethylthiazole kinase -
  NW977_RS10005 (NW977_10005) thiD 2058563..2059393 (-) 831 WP_216712616.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW977_RS10010 (NW977_10010) tenA 2059386..2060075 (-) 690 WP_000396067.1 thiaminase II -
  NW977_RS10015 (NW977_10015) sceD 2060703..2061398 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  NW977_RS10020 (NW977_10020) ssb 2061788..2062183 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW977_RS10025 (NW977_10025) - 2062377..2062817 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW977_RS10030 (NW977_10030) fabZ 2062876..2063316 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW977_RS10035 (NW977_10035) murA 2063350..2064615 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW977_RS10040 (NW977_10040) - 2064726..2064959 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW977_RS10045 (NW977_10045) - 2065091..2065183 (-) 93 WP_031929694.1 hypothetical protein -
  NW977_RS10050 (NW977_10050) - 2065519..2065923 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720269 NW977_RS10020 WP_000932694.1 2061788..2062183(-) (ssb) [Staphylococcus aureus strain 32-T-13]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720269 NW977_RS10020 WP_000932694.1 2061788..2062183(-) (ssb) [Staphylococcus aureus strain 32-T-13]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992