Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW977_RS07550 Genome accession   NZ_CP102953
Coordinates   1591862..1592548 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 32-T-13     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586862..1597548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW977_RS07530 (NW977_07530) rpsT 1587776..1588027 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW977_RS07535 (NW977_07535) holA 1588072..1589046 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  NW977_RS07540 (NW977_07540) comEC 1589103..1591304 (-) 2202 WP_258414908.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW977_RS07545 (NW977_07545) - 1591309..1591770 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW977_RS07550 (NW977_07550) comEA 1591862..1592548 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  NW977_RS07555 (NW977_07555) - 1592588..1593304 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW977_RS07560 (NW977_07560) rsfS 1593307..1593660 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW977_RS07565 (NW977_07565) yqeK 1593661..1594245 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW977_RS07570 (NW977_07570) nadD 1594235..1594804 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW977_RS07575 (NW977_07575) yhbY 1594807..1595097 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW977_RS07580 (NW977_07580) aroE 1595101..1595907 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  NW977_RS07585 (NW977_07585) yqeH 1595921..1597021 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=720258 NW977_RS07550 WP_001788928.1 1591862..1592548(-) (comEA) [Staphylococcus aureus strain 32-T-13]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720258 NW977_RS07550 WP_001788928.1 1591862..1592548(-) (comEA) [Staphylococcus aureus strain 32-T-13]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969