Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW977_RS04380 Genome accession   NZ_CP102953
Coordinates   925598..926584 (+) Length   328 a.a.
NCBI ID   WP_258414802.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 32-T-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920598..931584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW977_RS04355 (NW977_04355) opp4B 920812..921774 (+) 963 WP_000239818.1 oligopeptide ABC transporter permease -
  NW977_RS04360 (NW977_04360) opp4C 921786..922667 (+) 882 WP_258414801.1 oligopeptide ABC transporter permease -
  NW977_RS04365 (NW977_04365) trpS 922709..923698 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW977_RS04370 (NW977_04370) spxA 923993..924388 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW977_RS04375 (NW977_04375) mecA 924759..925478 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW977_RS04380 (NW977_04380) coiA 925598..926584 (+) 987 WP_258414802.1 competence protein CoiA family protein Machinery gene
  NW977_RS04385 (NW977_04385) pepF 926632..928440 (+) 1809 WP_258414803.1 oligoendopeptidase F -
  NW977_RS04390 (NW977_04390) yjbH 928899..929705 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW977_RS04395 (NW977_04395) - 929728..930093 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW977_RS04400 (NW977_04400) - 930197..930790 (-) 594 WP_258414594.1 CYTH domain-containing protein -
  NW977_RS04405 (NW977_04405) - 930976..931323 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38839.43 Da        Isoelectric Point: 9.6528

>NTDB_id=720243 NW977_RS04380 WP_258414802.1 925598..926584(+) (coiA) [Staphylococcus aureus strain 32-T-13]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIKMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720243 NW977_RS04380 WP_258414802.1 925598..926584(+) (coiA) [Staphylococcus aureus strain 32-T-13]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTTACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAAAGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGCTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATAGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979