Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT280_RS00715 Genome accession   NZ_CP118014
Coordinates   143835..144371 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B-766     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 138835..149371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT280_RS00695 soxR 140563..141027 (-) 465 WP_000412433.1 redox-sensitive transcriptional activator SoxR -
  PT280_RS00700 soxS 141113..141436 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PT280_RS00705 pdeC 141439..143025 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  PT280_RS00710 yjcB 143455..143736 (+) 282 WP_001295689.1 YjcB family protein -
  PT280_RS00715 ssb 143835..144371 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PT280_RS00720 uvrA 144625..147447 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PT280_RS00725 yjbR 147482..147838 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PT280_RS00730 yjbQ 147842..148258 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PT280_RS00735 aphA 148369..149082 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=720238 PT280_RS00715 WP_000168305.1 143835..144371(-) (ssb) [Escherichia coli strain B-766]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=720238 PT280_RS00715 WP_000168305.1 143835..144371(-) (ssb) [Escherichia coli strain B-766]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489