Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW977_RS02485 Genome accession   NZ_CP102953
Coordinates   533255..533824 (+) Length   189 a.a.
NCBI ID   WP_045174125.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 32-T-13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528255..538824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW977_RS02460 (NW977_02460) cysE 529468..530115 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW977_RS02465 (NW977_02465) cysS 530099..531499 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  NW977_RS02470 (NW977_02470) - 531492..531896 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW977_RS02475 (NW977_02475) rlmB 531904..532650 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW977_RS02480 (NW977_02480) - 532650..533174 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW977_RS02485 (NW977_02485) sigH 533255..533824 (+) 570 WP_045174125.1 RNA polymerase sigma factor Regulator
  NW977_RS02490 (NW977_02490) rpmG 533939..534082 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW977_RS02495 (NW977_02495) secE 534138..534320 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW977_RS02500 (NW977_02500) nusG 534333..534881 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW977_RS02505 (NW977_02505) rplK 535062..535484 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW977_RS02510 (NW977_02510) rplA 535692..536384 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW977_RS02515 (NW977_02515) rplJ 536656..537156 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  NW977_RS02520 (NW977_02520) rplL 537199..537567 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW977_RS02525 (NW977_02525) - 537742..538350 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.91 Da        Isoelectric Point: 9.5047

>NTDB_id=720238 NW977_RS02485 WP_045174125.1 533255..533824(+) (sigH) [Staphylococcus aureus strain 32-T-13]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720238 NW977_RS02485 WP_045174125.1 533255..533824(+) (sigH) [Staphylococcus aureus strain 32-T-13]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979