Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW967_RS09975 Genome accession   NZ_CP102952
Coordinates   2067202..2067597 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 39-B-49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2062202..2072597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS09950 (NW967_09950) thiE 2062560..2063201 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  NW967_RS09955 (NW967_09955) thiM 2063203..2063994 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  NW967_RS09960 (NW967_09960) thiD 2063978..2064808 (-) 831 WP_000594948.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW967_RS09965 (NW967_09965) tenA 2064801..2065490 (-) 690 WP_258411238.1 thiaminase II -
  NW967_RS09970 (NW967_09970) sceD 2066118..2066813 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  NW967_RS09975 (NW967_09975) ssb 2067202..2067597 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW967_RS09980 (NW967_09980) - 2067791..2068231 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW967_RS09985 (NW967_09985) fabZ 2068289..2068729 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW967_RS09990 (NW967_09990) murA 2068763..2070028 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW967_RS09995 (NW967_09995) - 2070139..2070372 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW967_RS10000 (NW967_10000) - 2070504..2070596 (-) 93 WP_258411676.1 hypothetical protein -
  NW967_RS10005 (NW967_10005) - 2070990..2071394 (-) 405 WP_258411239.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720227 NW967_RS09975 WP_000932694.1 2067202..2067597(-) (ssb) [Staphylococcus aureus strain 39-B-49]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720227 NW967_RS09975 WP_000932694.1 2067202..2067597(-) (ssb) [Staphylococcus aureus strain 39-B-49]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992