Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PUN50_RS14145 Genome accession   NZ_CP117988
Coordinates   3068753..3069481 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3063753..3074481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS14130 (PUN50_14130) clpC 3064189..3066762 (-) 2574 WP_274290545.1 ATP-dependent chaperone ClpB Regulator
  PUN50_RS14135 (PUN50_14135) pgeF 3066909..3067637 (-) 729 WP_077261878.1 peptidoglycan editing factor PgeF -
  PUN50_RS14140 (PUN50_14140) rluD 3067639..3068616 (-) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PUN50_RS14145 (PUN50_14145) comL 3068753..3069481 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  PUN50_RS14150 (PUN50_14150) - 3069624..3071093 (+) 1470 WP_012127061.1 lytic transglycosylase F -
  PUN50_RS14155 (PUN50_14155) hpf 3071470..3071796 (+) 327 WP_005425319.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PUN50_RS14160 (PUN50_14160) pheA 3072040..3073218 (+) 1179 WP_005533293.1 prephenate dehydratase -
  PUN50_RS14165 (PUN50_14165) yjjX 3073261..3073794 (+) 534 WP_274290546.1 inosine/xanthosine triphosphatase -
  PUN50_RS14170 (PUN50_14170) trpR 3073909..3074211 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=720220 PUN50_RS14145 WP_005425318.1 3068753..3069481(+) (comL) [Vibrio campbellii strain 20220413_1]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=720220 PUN50_RS14145 WP_005425318.1 3068753..3069481(+) (comL) [Vibrio campbellii strain 20220413_1]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAATTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCGACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGACCGTAACTTCATGCATGACTTGTTCAACGTTGATCGTAGTGACCGTG
ATCCAGAGCCAGTGAAGAAAGCATTCGACGACTTCAAAAAGCTGCTAGAACGTTACCCGAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAGAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTGCAAAAAGCGTTTCCTGATACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388