Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW967_RS07580 Genome accession   NZ_CP102952
Coordinates   1602223..1602909 (-) Length   228 a.a.
NCBI ID   WP_258411175.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 39-B-49     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597223..1607909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS07560 (NW967_07560) rpsT 1598137..1598388 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW967_RS07565 (NW967_07565) holA 1598433..1599407 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NW967_RS07570 (NW967_07570) comEC 1599464..1601665 (-) 2202 WP_250755367.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW967_RS07575 (NW967_07575) - 1601670..1602131 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW967_RS07580 (NW967_07580) comEA 1602223..1602909 (-) 687 WP_258411175.1 ComEA family DNA-binding protein Machinery gene
  NW967_RS07585 (NW967_07585) - 1602949..1603665 (-) 717 WP_258410047.1 class I SAM-dependent methyltransferase -
  NW967_RS07590 (NW967_07590) rsfS 1603668..1604021 (-) 354 WP_001088022.1 ribosome silencing factor -
  NW967_RS07595 (NW967_07595) yqeK 1604022..1604606 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW967_RS07600 (NW967_07600) nadD 1604596..1605165 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW967_RS07605 (NW967_07605) yhbY 1605168..1605458 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  NW967_RS07610 (NW967_07610) aroE 1605462..1606268 (-) 807 WP_258411176.1 shikimate dehydrogenase -
  NW967_RS07615 (NW967_07615) yqeH 1606282..1607382 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25801.56 Da        Isoelectric Point: 9.7956

>NTDB_id=720216 NW967_RS07580 WP_258411175.1 1602223..1602909(-) (comEA) [Staphylococcus aureus strain 39-B-49]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720216 NW967_RS07580 WP_258411175.1 1602223..1602909(-) (comEA) [Staphylococcus aureus strain 39-B-49]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGTACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.123

100

0.991
  comEA Staphylococcus aureus MW2

98.246

100

0.982