Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW967_RS04490 Genome accession   NZ_CP102952
Coordinates   941407..942393 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 39-B-49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936407..947393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS04465 (NW967_04465) opp4B 936620..937582 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  NW967_RS04470 (NW967_04470) opp4C 937594..938475 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NW967_RS04475 (NW967_04475) trpS 938517..939506 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW967_RS04480 (NW967_04480) spxA 939801..940196 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW967_RS04485 (NW967_04485) mecA 940567..941286 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW967_RS04490 (NW967_04490) coiA 941407..942393 (+) 987 WP_000959287.1 competence protein CoiA family protein Machinery gene
  NW967_RS04495 (NW967_04495) pepF 942441..944249 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NW967_RS04500 (NW967_04500) yjbH 944709..945515 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW967_RS04505 (NW967_04505) - 945538..945903 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW967_RS04510 (NW967_04510) - 946007..946600 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW967_RS04515 (NW967_04515) - 946786..947133 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=720201 NW967_RS04490 WP_000959287.1 941407..942393(+) (coiA) [Staphylococcus aureus strain 39-B-49]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720201 NW967_RS04490 WP_000959287.1 941407..942393(+) (coiA) [Staphylococcus aureus strain 39-B-49]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979