Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PUN50_RS06670 Genome accession   NZ_CP117988
Coordinates   1440557..1441201 (+) Length   214 a.a.
NCBI ID   WP_005434947.1    Uniprot ID   A0ABQ5Y0T2
Organism   Vibrio campbellii strain 20220413_1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435557..1446201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS06650 (PUN50_06650) - 1435877..1436197 (-) 321 WP_005431208.1 HI1450 family dsDNA-mimic protein -
  PUN50_RS06655 (PUN50_06655) yeiP 1436200..1436766 (-) 567 WP_005431209.1 elongation factor P-like protein YeiP -
  PUN50_RS06660 (PUN50_06660) - 1436954..1437721 (+) 768 WP_274291070.1 nucleotidyltransferase domain-containing protein -
  PUN50_RS06665 (PUN50_06665) - 1437761..1440124 (-) 2364 WP_274291071.1 DNA polymerase II -
  PUN50_RS06670 (PUN50_06670) letA 1440557..1441201 (+) 645 WP_005434947.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PUN50_RS06675 (PUN50_06675) uvrC 1441203..1443035 (+) 1833 WP_080766747.1 excinuclease ABC subunit UvrC -
  PUN50_RS06680 (PUN50_06680) pgsA 1443082..1443639 (+) 558 WP_005530466.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23797.38 Da        Isoelectric Point: 5.6546

>NTDB_id=720192 PUN50_RS06670 WP_005434947.1 1440557..1441201(+) (letA) [Vibrio campbellii strain 20220413_1]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEEAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=720192 PUN50_RS06670 WP_005434947.1 1440557..1441201(+) (letA) [Vibrio campbellii strain 20220413_1]
TTGATAAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGTCGCAGTAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCAGGAATTGGCGGCTTGGAAGCCACTAAAAAGATTCTTCGCGTGAATCCTGATGTAAAAATCATCGTA
TTAACCGTTCATACGGAAAATCCGTTCCCAACTAAAGTGATGCAGGCGGGTGCTTCTGGTTACCTAACCAAAGGTGCAGG
TCCTGATGAAATGGTTAACGCAATTCGTGTGGTTAACAGTGGGCAGCGTTACATCTCGCCAGAGATTGCGCAGCAGATGG
CATTGAGTCAATTCTCACCTGCCTCAGAAAACCCATTTAAAGACCTTTCTGAACGCGAACTGCAGATCATGATGATGATC
ACTAAAGGGCAGAAAGTAACGGATATTTCTGAACAACTGAATTTAAGTCCAAAAACAGTCAACAGCTACCGCTACCGTCT
GTTTAGCAAATTGGACATCAATGGTGACGTTGAGTTAACACACTTAGCGATCCGCCATGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495