Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PUN50_RS05095 Genome accession   NZ_CP117988
Coordinates   1084842..1085441 (+) Length   199 a.a.
NCBI ID   WP_005432989.1    Uniprot ID   A0AAQ2XYN5
Organism   Vibrio campbellii strain 20220413_1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079842..1090441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS05070 (PUN50_05070) - 1080929..1081060 (+) 132 WP_005432936.1 hypothetical protein -
  PUN50_RS05075 (PUN50_05075) - 1081133..1081480 (+) 348 WP_005432941.1 YbaN family protein -
  PUN50_RS05080 (PUN50_05080) apt 1081647..1082192 (+) 546 WP_012128595.1 adenine phosphoribosyltransferase -
  PUN50_RS05085 (PUN50_05085) dnaX 1082201..1084399 (+) 2199 WP_167423985.1 DNA polymerase III subunit gamma/tau -
  PUN50_RS05090 (PUN50_05090) - 1084482..1084811 (+) 330 WP_005432961.1 YbaB/EbfC family nucleoid-associated protein -
  PUN50_RS05095 (PUN50_05095) recR 1084842..1085441 (+) 600 WP_005432989.1 recombination mediator RecR Machinery gene
  PUN50_RS05100 (PUN50_05100) aqpZ 1085495..1086193 (-) 699 WP_005432982.1 aquaporin Z -
  PUN50_RS05105 (PUN50_05105) - 1086419..1087678 (-) 1260 WP_045369862.1 amino acid permease -
  PUN50_RS05110 (PUN50_05110) - 1087993..1088373 (+) 381 WP_005432926.1 RidA family protein -
  PUN50_RS05115 (PUN50_05115) - 1088388..1089665 (+) 1278 WP_274290966.1 serine dehydratase subunit alpha family protein -
  PUN50_RS05120 (PUN50_05120) - 1089694..1090350 (+) 657 WP_045400601.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.75 Da        Isoelectric Point: 5.7468

>NTDB_id=720184 PUN50_RS05095 WP_005432989.1 1084842..1085441(+) (recR) [Vibrio campbellii strain 20220413_1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQAMTEIGHCTECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CKEHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=720184 PUN50_RS05095 WP_005432989.1 1084842..1085441(+) (recR) [Vibrio campbellii strain 20220413_1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTTGGCCCCAAGTCGGCGCAGCG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGCCAAGCAATGACAGAAA
TTGGCCATTGCACCGAGTGTCGTACTTTCACTGAAGAAGAAGTTTGTCATATTTGTACTAACCCAAAACGCCAAGAAAAT
GGTCAGATTTGTGTGGTAGAAAGTCCGGCAGACATCGCAGCAGTAGAAGCAACGGGCCAATACTCGGGTCGATACTTTGT
ACTGATGGGACATTTATCACCGCTGGACGGAATTGGTCCAAGTGATATTGGTCTAGATGTATTGGATTACCGTCTGCGCC
GCGGAGATATCTCTGAGGTGATTCTCGCTACCAACCCAACGGTAGAAGGGGAAGCGACGGCTCATTACATCGCAGAACTT
TGTAAAGAACACCAAGTGGAGGCAAGCCGCATTGCACACGGTGTACCAGTAGGCGGCGAGCTTGAGCTCGTGGACGGGAC
TACCTTGTCACACTCCCTTCTGGGTCGACACAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2XYN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

100

0.452
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

100

0.442
  recR Streptococcus pneumoniae R6

37.306

96.985

0.362