Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NVV94_RS19170 Genome accession   NZ_CP102951
Coordinates   4132549..4133184 (-) Length   211 a.a.
NCBI ID   WP_258443956.1    Uniprot ID   -
Organism   Pseudomonas sp. LS1212     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4127549..4138184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV94_RS19135 (NVV94_19135) - 4128267..4128857 (-) 591 WP_258443950.1 NTP transferase domain-containing protein -
  NVV94_RS19140 (NVV94_19140) murB 4128901..4129920 (-) 1020 WP_258443951.1 UDP-N-acetylmuramate dehydrogenase -
  NVV94_RS19145 (NVV94_19145) - 4129929..4130132 (-) 204 Protein_3766 low molecular weight phosphotyrosine protein phosphatase -
  NVV94_RS19150 (NVV94_19150) kdsB 4130132..4130896 (-) 765 WP_258443952.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NVV94_RS19155 (NVV94_19155) - 4130893..4131078 (-) 186 WP_003247142.1 Trm112 family protein -
  NVV94_RS19160 (NVV94_19160) lpxK 4131114..4132124 (-) 1011 WP_258443954.1 tetraacyldisaccharide 4'-kinase -
  NVV94_RS19165 (NVV94_19165) - 4132124..4132552 (-) 429 WP_258443955.1 biopolymer transporter ExbD -
  NVV94_RS19170 (NVV94_19170) exbB 4132549..4133184 (-) 636 WP_258443956.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NVV94_RS19175 (NVV94_19175) comA 4133257..4135491 (-) 2235 WP_258443958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NVV94_RS19180 (NVV94_19180) - 4135632..4136150 (+) 519 WP_258443959.1 DUF2062 domain-containing protein -
  NVV94_RS19185 (NVV94_19185) - 4136992..4137771 (-) 780 WP_258443960.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22914.10 Da        Isoelectric Point: 7.4250

>NTDB_id=720178 NVV94_RS19170 WP_258443956.1 4132549..4133184(-) (exbB) [Pseudomonas sp. LS1212]
MWELVKSGGWMMLPIILSSIAAVGIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLNTEKLKELRAHSPLGEVLAAGLAN
SRHGREIMKECIEEAAARVIHDLERYINTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGAGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVEMEQEAIKLVEVVQGDRDVELAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=720178 NVV94_RS19170 WP_258443956.1 4132549..4133184(-) (exbB) [Pseudomonas sp. LS1212]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATAGCAGCGGTGGGCATCGTCGC
CGAGCGCCTGTGGACGTTGCGAGCCAGCCGCGTGACCCCTCCGCATTTGCTTGGTCAGGTCTGGCGCTGGATCAAGGACA
AACAACTGAACACGGAAAAGCTCAAGGAGCTGCGCGCCCATTCGCCGCTGGGCGAGGTCCTTGCAGCGGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCTGCCCGCGTCATTCATGATCTGGAGCGCTACAT
CAACACGCTGGGTACGATTGCCGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACCGTGCTGGGTATGATCGATATCTTCA
GTGCATTCATGGGCGCGGGCATGGGCACCAACGCAGCGGTGCTCGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCC
GCCGGCTTGATGGTGGGTATTCCAGCGGTATTCTTCCATCGTTTCCTGCAGCGTCGGATCGACGAGCTGGTGGTGGAAAT
GGAGCAGGAGGCCATCAAGCTGGTCGAAGTAGTGCAGGGCGACCGTGATGTCGAACTGGCTGGGGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839