Detailed information NTG0720179

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NVV94_RS19175
• Genome accession: NZ_CP102951
• Coordinates: 4133257..4135491 (-)
• Length: 744 a.a.
• NCBI ID: WP_258443958.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS1212
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4128257..4140491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV94_RS19135 (NVV94_19135)	-	4128267..4128857 (-)	591	WP_258443950.1	NTP transferase domain-containing protein	-
NVV94_RS19140 (NVV94_19140)	murB	4128901..4129920 (-)	1020	WP_258443951.1	UDP-N-acetylmuramate dehydrogenase	-
NVV94_RS19145 (NVV94_19145)	-	4129929..4130132 (-)	204	Protein_3766	low molecular weight phosphotyrosine protein phosphatase	-
NVV94_RS19150 (NVV94_19150)	kdsB	4130132..4130896 (-)	765	WP_258443952.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NVV94_RS19155 (NVV94_19155)	-	4130893..4131078 (-)	186	WP_003247142.1	Trm112 family protein	-
NVV94_RS19160 (NVV94_19160)	lpxK	4131114..4132124 (-)	1011	WP_258443954.1	tetraacyldisaccharide 4'-kinase	-
NVV94_RS19165 (NVV94_19165)	-	4132124..4132552 (-)	429	WP_258443955.1	biopolymer transporter ExbD	-
NVV94_RS19170 (NVV94_19170)	exbB	4132549..4133184 (-)	636	WP_258443956.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NVV94_RS19175 (NVV94_19175)	comA	4133257..4135491 (-)	2235	WP_258443958.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NVV94_RS19180 (NVV94_19180)	-	4135632..4136150 (+)	519	WP_258443959.1	DUF2062 domain-containing protein	-
NVV94_RS19185 (NVV94_19185)	-	4136992..4137771 (-)	780	WP_258443960.1	ABC transporter permease	-
NVV94_RS19190 (NVV94_19190)	-	4137768..4138700 (-)	933	WP_258443961.1	ABC transporter ATP-binding protein	-
NVV94_RS19195 (NVV94_19195)	-	4138833..4139456 (-)	624	WP_258443962.1	glutathione S-transferase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 80498.78 Da
• Isoelectric Point: 9.9760

>NTDB_id=720179 NVV94_RS19175 WP_258443958.1 4133257..4135491(-) (comA) [Pseudomonas sp. LS1212]
MRTGMVALALGLLCLRFLPALPPVWSLVALVVVGLMLLPFRSYPLGFFLLGFSWACMSAQWALDKRLAPELDGRTLWVEG
RVVGLPNQAARVIRFELADATSRRAELPPLMRLSWYGGPPVNSGERWRLAVNLKRPSGLVNPHLSDQEAALLARRIGATG
SVKAGELLAPARAAWRDGVRQRLLGVDALGREGGLAALVLGDGDSLDAGDWRILQDTGTVHLLVISGQHVGMLAGLVYAI
VAGLARFGCWPRTLPWLPWACALAFSAALGYGLLAGFQVPVRRACIMLGLVLLWRLRYRHLGVGWPLLLALVGVLLLEPL
ASLQPGFWLSFAAVAVLILAFSGRLGGWRAWQAWTRAQWLVAIGLLPVLLVLGLPISISAPLANLVAVPWVSFGVLPLAL
LGTLTLPVPIVGESLLWLAGGLLDALFGFLARIAGWRSAWLPPAVPAWAWLLSCLGAFMLLLPKGVPVRLLGWPLLLLAV
LVPQTKIPEGEVEVWQLDVGQGLAFILRTRQHTMLYDAGPALGGADLGERVVLPVLRRLGVRELDLMLLSHADADHAGGA
PAVMRGMPVARVLSGEAAALPAVLQAEPCVSGERWEWDTVSFSLWQWAQAGDSNQDSCVLMVEARGERLLLTGDMDARSE
RAWLQGPDATDVHWLQAPHHGSRSSSSRAFLEATAPRGVLISRGRHNAFGHPHPEVMARYRALGIIAYDSVEHGALRLQL
GRFGVPEGLRAQRRFWRDAIVPGA

Nucleotide

• Length: 2235 bp

>NTDB_id=720179 NVV94_RS19175 WP_258443958.1 4133257..4135491(-) (comA) [Pseudomonas sp. LS1212]
ATGCGCACAGGGATGGTTGCGCTCGCGCTAGGGCTGTTGTGCCTGCGGTTTTTACCGGCGCTGCCGCCGGTCTGGTCGTT
GGTCGCGCTGGTCGTGGTTGGGCTGATGCTCCTGCCATTTCGCAGCTACCCCCTCGGTTTTTTTCTGCTCGGTTTCAGTT
GGGCCTGCATGTCGGCGCAATGGGCGCTGGATAAGCGCCTGGCGCCCGAACTGGACGGACGCACCCTTTGGGTAGAAGGG
CGGGTGGTCGGGCTGCCGAACCAGGCGGCTCGGGTCATACGCTTTGAACTGGCCGATGCAACGTCGCGACGTGCCGAGCT
GCCACCACTCATGCGCTTGAGCTGGTACGGCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGATTGGCGGTGAACCTCA
AGCGCCCGTCCGGGCTGGTCAATCCGCATCTCTCCGATCAGGAGGCTGCCTTGCTGGCCAGACGCATCGGCGCCACCGGC
AGTGTCAAGGCCGGGGAGTTGCTGGCGCCAGCCCGGGCCGCCTGGCGCGATGGTGTTCGTCAGCGTCTGCTGGGCGTTGA
TGCCCTGGGGCGTGAAGGCGGATTGGCGGCGCTGGTGCTCGGTGATGGCGACAGCCTTGATGCCGGCGATTGGCGAATTT
TACAGGATACCGGCACCGTGCATCTGCTGGTGATCTCGGGGCAGCATGTCGGCATGCTGGCAGGGCTTGTGTACGCCATC
GTTGCAGGGCTGGCGCGGTTTGGTTGCTGGCCACGAACGCTGCCCTGGTTGCCCTGGGCCTGTGCATTGGCCTTTTCGGC
GGCGCTGGGATACGGCTTGCTGGCAGGTTTCCAGGTACCCGTTCGTCGGGCCTGCATCATGCTCGGGCTGGTCCTGCTGT
GGCGCTTGCGCTACCGCCATCTGGGCGTCGGTTGGCCTTTGCTGCTGGCGCTTGTTGGGGTGCTGCTCCTCGAGCCGCTG
GCGAGCCTGCAGCCAGGATTCTGGCTGTCATTCGCTGCTGTGGCGGTATTGATCCTGGCGTTCAGCGGTCGCCTGGGCGG
CTGGCGGGCATGGCAGGCCTGGACCCGCGCTCAGTGGCTGGTCGCCATCGGGTTGTTGCCGGTGCTGCTGGTCCTGGGGC
TGCCCATCAGTATCAGTGCGCCACTGGCCAATCTGGTGGCGGTGCCGTGGGTCAGTTTCGGCGTGCTGCCCCTGGCGTTG
TTGGGGACGCTCACGTTGCCGGTACCGATAGTCGGTGAAAGCCTTCTGTGGCTGGCAGGTGGCCTGCTCGATGCCTTGTT
CGGATTTCTCGCCCGAATCGCCGGTTGGCGGTCCGCCTGGTTGCCGCCGGCCGTACCCGCCTGGGCCTGGTTGCTCAGCT
GCCTGGGGGCCTTCATGTTGCTGTTGCCCAAAGGCGTGCCGGTGCGTTTGCTGGGTTGGCCATTGTTATTGCTGGCGGTA
TTGGTCCCGCAGACGAAAATCCCTGAGGGCGAAGTGGAAGTCTGGCAGTTGGATGTGGGGCAGGGGCTGGCGTTCATTCT
GCGCACTCGCCAGCATACGATGCTTTACGACGCCGGGCCGGCGCTGGGTGGCGCAGACCTTGGCGAGCGAGTGGTCTTGC
CGGTGTTGCGCAGGTTGGGTGTGCGCGAGCTGGACCTGATGTTGCTCAGCCATGCCGACGCCGACCATGCCGGCGGTGCT
CCGGCAGTGATGCGGGGAATGCCGGTGGCACGCGTGCTCAGTGGCGAAGCGGCGGCGCTGCCGGCCGTTCTGCAGGCCGA
GCCTTGCGTCAGTGGTGAGCGCTGGGAGTGGGACACCGTCAGCTTTTCTTTGTGGCAATGGGCCCAGGCAGGCGACAGCA
ACCAGGACTCCTGCGTGCTGATGGTGGAGGCGCGAGGCGAGCGGCTGTTGCTCACCGGCGACATGGACGCCCGCAGTGAG
CGCGCCTGGCTGCAAGGCCCGGACGCGACCGACGTGCACTGGCTGCAAGCGCCTCATCACGGCAGCCGCAGTTCATCGTC
GCGGGCCTTTCTTGAGGCGACCGCGCCCAGGGGCGTGCTGATTTCGCGTGGACGCCACAATGCTTTTGGCCATCCGCACC
CGGAGGTCATGGCGCGTTATCGTGCGCTGGGCATCATCGCCTACGACAGCGTCGAGCATGGCGCCTTGCGCCTGCAGCTG
GGGCGTTTCGGCGTCCCCGAGGGGTTGCGCGCGCAACGGCGCTTCTGGCGTGATGCCATTGTGCCTGGCGCGTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.305	95.968	0.608
comA	Ralstonia pseudosolanacearum GMI1000	33.018	100	0.375