Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NW338_RS07595 Genome accession   NZ_CP102945
Coordinates   1570435..1571409 (-) Length   324 a.a.
NCBI ID   WP_111064924.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SCAID OTT1-2022 (150)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565435..1576409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW338_RS07555 (NW338_07555) gcvT 1565936..1567027 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  NW338_RS07560 (NW338_07560) - 1567186..1567710 (-) 525 WP_001015121.1 shikimate kinase -
  NW338_RS07565 (NW338_07565) - 1567700..1567846 (-) 147 WP_001789879.1 hypothetical protein -
  NW338_RS07570 (NW338_07570) comGF 1567943..1568440 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW338_RS07575 (NW338_07575) comGE 1568358..1568657 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  NW338_RS07580 (NW338_07580) comGD 1568644..1569090 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW338_RS07585 (NW338_07585) comGC 1569068..1569379 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW338_RS07590 (NW338_07590) comGB 1569393..1570463 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW338_RS07595 (NW338_07595) comGA 1570435..1571409 (-) 975 WP_111064924.1 competence type IV pilus ATPase ComGA Machinery gene
  NW338_RS07600 (NW338_07600) - 1571461..1572084 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW338_RS07605 (NW338_07605) - 1572081..1572410 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW338_RS07610 (NW338_07610) - 1572410..1573396 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW338_RS07615 (NW338_07615) - 1573393..1573596 (-) 204 WP_000087561.1 YqgQ family protein -
  NW338_RS07620 (NW338_07620) - 1573577..1575040 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  NW338_RS07625 (NW338_07625) - 1575052..1575591 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  NW338_RS07630 (NW338_07630) rpmG 1575800..1575949 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36921.00 Da        Isoelectric Point: 8.8524

>NTDB_id=720080 NW338_RS07595 WP_111064924.1 1570435..1571409(-) (comGA) [Staphylococcus aureus strain SCAID OTT1-2022 (150)]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDLAKCVIHASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=720080 NW338_RS07595 WP_111064924.1 1570435..1571409(-) (comGA) [Staphylococcus aureus strain SCAID OTT1-2022 (150)]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATCTTG
CCAAGTGTGTTATACATGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994