Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PT798_RS05570 Genome accession   NZ_CP117979
Coordinates   1165900..1166871 (+) Length   323 a.a.
NCBI ID   WP_031775063.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B-41012     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160900..1171871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS05550 nrdI 1161637..1162035 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PT798_RS05555 nrdE 1161998..1164103 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PT798_RS05560 nrdF 1164221..1165192 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PT798_RS05565 - 1165706..1165861 (+) 156 Protein_1089 hypothetical protein -
  PT798_RS05570 ceuB 1165900..1166871 (+) 972 WP_031775063.1 ABC transporter permease Machinery gene
  PT798_RS05575 - 1166858..1167815 (+) 958 Protein_1091 iron chelate uptake ABC transporter family permease subunit -
  PT798_RS05580 - 1167812..1168573 (+) 762 WP_000616842.1 ABC transporter ATP-binding protein -
  PT798_RS05585 - 1168692..1169720 (+) 1029 WP_000754443.1 siderophore ABC transporter substrate-binding protein -
  PT798_RS05590 - 1170037..1170351 (-) 315 WP_001127269.1 CHY zinc finger protein -
  PT798_RS05595 murB 1170369..1171292 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35610.18 Da        Isoelectric Point: 10.1194

>NTDB_id=720080 PT798_RS05570 WP_031775063.1 1165900..1166871(+) (ceuB) [Staphylococcus aureus strain B-41012]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALVGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=720080 PT798_RS05570 WP_031775063.1 1165900..1166871(+) (ceuB) [Staphylococcus aureus strain B-41012]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGTAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471