Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW338_RS07580 Genome accession   NZ_CP102945
Coordinates   1568644..1569090 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SCAID OTT1-2022 (150)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563644..1574090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW338_RS07550 (NW338_07550) gcvPA 1564570..1565916 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW338_RS07555 (NW338_07555) gcvT 1565936..1567027 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  NW338_RS07560 (NW338_07560) - 1567186..1567710 (-) 525 WP_001015121.1 shikimate kinase -
  NW338_RS07565 (NW338_07565) - 1567700..1567846 (-) 147 WP_001789879.1 hypothetical protein -
  NW338_RS07570 (NW338_07570) comGF 1567943..1568440 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW338_RS07575 (NW338_07575) comGE 1568358..1568657 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  NW338_RS07580 (NW338_07580) comGD 1568644..1569090 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW338_RS07585 (NW338_07585) comGC 1569068..1569379 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW338_RS07590 (NW338_07590) comGB 1569393..1570463 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW338_RS07595 (NW338_07595) comGA 1570435..1571409 (-) 975 WP_111064924.1 competence type IV pilus ATPase ComGA Machinery gene
  NW338_RS07600 (NW338_07600) - 1571461..1572084 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW338_RS07605 (NW338_07605) - 1572081..1572410 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW338_RS07610 (NW338_07610) - 1572410..1573396 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW338_RS07615 (NW338_07615) - 1573393..1573596 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720077 NW338_RS07580 WP_001788899.1 1568644..1569090(-) (comGD) [Staphylococcus aureus strain SCAID OTT1-2022 (150)]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720077 NW338_RS07580 WP_001788899.1 1568644..1569090(-) (comGD) [Staphylococcus aureus strain SCAID OTT1-2022 (150)]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1