Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   MKL45_RS16355 Genome accession   NZ_CP102934
Coordinates   3444278..3445096 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter sp. AOR07_HL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439278..3450096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKL45_RS16340 (MKL45_16345) pilE 3439504..3439929 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  MKL45_RS16345 (MKL45_16350) pilY2 3439926..3440408 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  MKL45_RS16350 (MKL45_16355) pilY1 3440421..3444266 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  MKL45_RS16355 (MKL45_16360) pilX 3444278..3445096 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MKL45_RS16360 (MKL45_16365) pilW 3445093..3446094 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  MKL45_RS16365 (MKL45_16370) pilV 3446095..3446655 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  MKL45_RS16370 (MKL45_16375) fimU 3446649..3447122 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  MKL45_RS16375 (MKL45_16380) ispH 3447292..3448242 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MKL45_RS16380 (MKL45_16385) gmk 3448365..3448994 (+) 630 WP_000015937.1 guanylate kinase -
  MKL45_RS16385 (MKL45_16390) rpoZ 3449067..3449345 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  MKL45_RS16390 (MKL45_16395) - 3449384..3449514 (+) 131 Protein_3194 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=719966 MKL45_RS16355 WP_000149376.1 3444278..3445096(-) (pilX) [Acinetobacter sp. AOR07_HL]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=719966 MKL45_RS16355 WP_000149376.1 3444278..3445096(-) (pilX) [Acinetobacter sp. AOR07_HL]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989