Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilY1   Type   Machinery gene
Locus tag   MKL45_RS16350 Genome accession   NZ_CP102934
Coordinates   3440421..3444266 (-) Length   1281 a.a.
NCBI ID   WP_025469982.1    Uniprot ID   -
Organism   Acinetobacter sp. AOR07_HL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3435421..3449266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKL45_RS16315 (MKL45_16320) - 3436182..3437123 (+) 942 WP_097355459.1 triacylglycerol lipase -
  MKL45_RS16320 (MKL45_16325) rplS 3437176..3437544 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  MKL45_RS16325 (MKL45_16330) trmD 3437752..3438492 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MKL45_RS16330 (MKL45_16335) rimM 3438538..3439086 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  MKL45_RS16335 (MKL45_16340) rpsP 3439106..3439357 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  MKL45_RS16340 (MKL45_16345) pilE 3439504..3439929 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  MKL45_RS16345 (MKL45_16350) pilY2 3439926..3440408 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  MKL45_RS16350 (MKL45_16355) pilY1 3440421..3444266 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  MKL45_RS16355 (MKL45_16360) pilX 3444278..3445096 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MKL45_RS16360 (MKL45_16365) pilW 3445093..3446094 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  MKL45_RS16365 (MKL45_16370) pilV 3446095..3446655 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  MKL45_RS16370 (MKL45_16375) fimU 3446649..3447122 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  MKL45_RS16375 (MKL45_16380) ispH 3447292..3448242 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MKL45_RS16380 (MKL45_16385) gmk 3448365..3448994 (+) 630 WP_000015937.1 guanylate kinase -

Sequence


Protein


Download         Length: 1281 a.a.        Molecular weight: 137559.17 Da        Isoelectric Point: 7.8780

>NTDB_id=719965 MKL45_RS16350 WP_025469982.1 3440421..3444266(-) (pilY1) [Acinetobacter sp. AOR07_HL]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLKSGGTTPSAHAYAEAAAYLM
GTTTYSETNYAIRKESYIKRVRRFDNKTEYSSCTNSSQIDINTLSQSCRSNGWSSWTTFNPGVNTLTDYETSSDWTYYYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAS
VMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPI
AGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAVPPEGTNPFDTVANTASYVLGKFDP
STGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILY
GTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLT
DACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQ
TKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGRE
GMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSL
SSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGTINS
NKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=719965 MKL45_RS16350 WP_025469982.1 3440421..3444266(-) (pilY1) [Acinetobacter sp. AOR07_HL]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAGGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGCTTAGCCATGCTTAAAAATGGTATGAATGCT
TTTTTGGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGACAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCTCCTTTAGGTGATGCAAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAAAATCAGGGGGCACGACACCTTCAGCCCATGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGAACAACCACATATTCAGAAACGAATTATGCTATTCGTAAAGAGAGTTATATTAAACGTGTAAGAAGATTTGATAATAA
AACTGAATACTCTTCTTGCACTAATTCTTCACAAATTGATATTAATACCTTAAGTCAATCATGTCGTTCTAATGGCTGGA
GTAGCTGGACCACGTTCAATCCAGGAGTAAATACATTAACAGATTATGAGACTTCATCTGACTGGACTTATTACTATACT
TATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGATACAGCTAG
CAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAGTAGCGAATC
GTCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGTTCGGCAAGT
GTTATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTACGGCAGACTC
TGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAATCCTGCCGGAGTCTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGTTCGAGAACC
CAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTATGGAAATGG
TGGTTTTTTCCCTACTCAGAGTTCACAAGGTGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATAAAGTTCCTT
TAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATATGGTTATTTA
CGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGG
AGCGAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGG
ATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATT
GCTGGGCAACCTGAAACACGTGATGCAGAAGGAAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGTTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCA
TCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGA
TATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTT
TACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTAT
GGAACCATGGAAGGCGGGTTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTT
AAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTT
GGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCAAAGCAAATG
AATATTTATGGCGGCATGCGCATGGGGGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCT
TTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGTCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTT
ATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACT
GACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCGTTTGTGGTG
GACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTG
ATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAG
ACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTA
TGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACGATTATGGAA
TTCACACTTTTATTACAGTAGGTATTGCATCAGGAGACCGTAGTACACCTTTAGACGTTTACCCACTCACAGGCCGTGAA
GGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTTTGTTAAAAA
GAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTC
TAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCCACTACAGGAGTAGGTAAAGGTGGTTGGTATCGCTCGCTT
TCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAAT
GGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTTGCCTACCTC
GTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCA
AATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGT
CATTGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGCAAATTAC
AGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAGTGTACAAGTCATTTACTTCCTGTGCGCTGGTATGAGCGCTAT
CGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.733

100

0.891