Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PT723_RS07285 Genome accession   NZ_CP117971
Coordinates   1504337..1505074 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B-1109     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499337..1510074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT723_RS07255 yfiL 1499495..1499860 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  PT723_RS07260 aroF 1500070..1501140 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PT723_RS07265 tyrA 1501151..1502272 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PT723_RS07270 pheA 1502315..1503475 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PT723_RS07275 pheL 1503574..1503621 (-) 48 WP_010723158.1 phe operon leader peptide -
  PT723_RS07280 raiA 1503725..1504066 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PT723_RS07285 comL 1504337..1505074 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PT723_RS07290 rluD 1505209..1506189 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PT723_RS07295 yfiH 1506186..1506917 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  PT723_RS07300 clpC 1507047..1509620 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=719917 PT723_RS07285 WP_000197686.1 1504337..1505074(-) (comL) [Escherichia coli strain B-1109]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=719917 PT723_RS07285 WP_000197686.1 1504337..1505074(-) (comL) [Escherichia coli strain B-1109]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376