Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JMH49_RS00585 Genome accession   NZ_AP024270
Coordinates   110436..111467 (-) Length   343 a.a.
NCBI ID   WP_201351054.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105436..116467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH49_RS00560 (TthHB5018_01080) pilD 106396..107466 (+) 1071 WP_201351051.1 A24 family peptidase Machinery gene
  JMH49_RS00565 (TthHB5018_01090) - 107504..108007 (+) 504 WP_201351052.1 DUF2939 domain-containing protein -
  JMH49_RS00570 (TthHB5018_01100) - 108021..108941 (+) 921 WP_011227819.1 nitroreductase family protein -
  JMH49_RS00575 (TthHB5018_01110) - 108895..109692 (-) 798 WP_201351053.1 C40 family peptidase -
  JMH49_RS00580 (TthHB5018_01120) - 109693..110451 (-) 759 WP_041443621.1 DUF721 domain-containing protein -
  JMH49_RS00585 (TthHB5018_01130) recF 110436..111467 (-) 1032 WP_201351054.1 DNA replication/repair protein RecF Machinery gene
  JMH49_RS00590 (TthHB5018_01140) - 111469..112641 (-) 1173 WP_018110997.1 MFS transporter -
  JMH49_RS00595 (TthHB5018_01150) pstB 112652..113467 (-) 816 WP_201351055.1 phosphate ABC transporter ATP-binding protein PstB -
  JMH49_RS00600 (TthHB5018_01160) pstA 113461..114675 (-) 1215 WP_018110995.1 phosphate ABC transporter permease PstA -
  JMH49_RS00605 (TthHB5018_01170) pstC 114668..115570 (-) 903 WP_018110994.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38139.96 Da        Isoelectric Point: 8.5003

>NTDB_id=71969 JMH49_RS00585 WP_201351054.1 110436..111467(-) (recF) [Thermus thermophilus strain HB5018]
MRLLLFRQKNFRNLAFAAFEPPAGLFALVGGNAQGKTSLLLGLHLVLGGEVRTALADLVRFGEREAWLYAEVETELGRYR
VEQRLSPEGREVLLNERSVGLRGLHELPGSVLVLPEDVEVVLGAKEERRSFLDRLIGRFSRRYAALLSAYERALRQRNAL
LKAGGNGLGVWDRELARYGEEIKALRRRFLQRFHPLFQSIHRTLAPGEVGLRLEETAPGDLLEALEARRQEELERGQTLV
GPHRDDLVFLLGGRPAHRFASRGEAKALALALRLAEHRLLTEHHGEAPLLLVDEWSEELDEARRQAVLAYARGLPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=71969 JMH49_RS00585 WP_201351054.1 110436..111467(-) (recF) [Thermus thermophilus strain HB5018]
ATGCGGCTCCTCCTCTTCCGGCAGAAGAACTTCCGCAACCTGGCCTTTGCTGCCTTTGAGCCACCGGCAGGGCTTTTCGC
CCTGGTGGGGGGGAACGCCCAGGGAAAGACCAGCCTCCTCCTAGGCCTGCACCTGGTCCTTGGGGGGGAGGTGCGGACAG
CTTTGGCCGACCTGGTGCGCTTTGGGGAAAGGGAGGCCTGGCTCTACGCGGAGGTGGAAACCGAGCTTGGGCGCTACCGG
GTGGAGCAGCGCCTTTCCCCTGAGGGGCGGGAGGTACTGCTCAACGAGCGCTCCGTGGGCCTAAGGGGACTACACGAGCT
CCCCGGCTCGGTCCTGGTCCTCCCTGAGGACGTGGAGGTGGTCCTGGGGGCCAAGGAGGAGCGCCGGAGCTTCCTGGACC
GGCTGATCGGGCGCTTCTCCCGGCGGTACGCCGCCTTGCTTTCCGCCTACGAGCGAGCCCTGCGCCAGCGGAACGCCCTC
CTGAAGGCAGGGGGGAACGGCCTTGGGGTGTGGGACCGGGAGCTGGCCCGTTATGGGGAGGAGATCAAGGCCCTAAGGCG
CCGCTTCCTCCAGCGTTTCCACCCCCTCTTCCAGAGCATCCACCGCACCCTGGCCCCAGGGGAGGTGGGGCTACGGCTGG
AGGAGACCGCCCCGGGCGACCTCCTGGAGGCCCTGGAGGCGCGGCGCCAGGAGGAGCTGGAGCGGGGGCAGACCCTGGTG
GGCCCCCACCGGGACGACCTGGTCTTCCTCCTTGGGGGGCGGCCTGCCCACCGCTTCGCCAGCCGGGGGGAGGCCAAGGC
CCTGGCCCTGGCCCTGCGCCTGGCGGAGCACCGCCTCCTCACAGAGCACCACGGGGAAGCCCCCCTCCTTCTGGTGGACG
AGTGGAGCGAGGAGCTGGACGAGGCCAGGCGTCAGGCGGTCCTGGCCTACGCCCGGGGGCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.533

98.542

0.399

Multiple sequence alignment